Hi,<br><br>I got my local instance of Galaxy running and most tools work properly. Unfortunately I seem not to understand how to implement cufflinks within Galaxy, in particular I do not know how to inform Galaxy about the location of GTF annotation files.<br>
<br>I searched the archives for this and was not successful. Furthermore I cannot find a preference file holding cufflinks specific information nor a general place to keep annotation data.<br><br>Who can point me there?<br>
<br>Best regards and thanks for your effort!<br>Maxim<br>