When I use an old version of GATK, it failed with a report &quot;-nt&quot; option was not supported, I guess old GATK does not support multi-threading.<div>If I use a new version of GATK, it failed with a report &quot;-<span style="background-color:white;color:rgb(0,0,0)">et NO_ET&quot; need a key file to work since new GATK force users to report usage unless we obtain a key file, but it seems no place for galaxy to specify the key file.</span></div>
<div><span style="background-color:white;color:rgb(0,0,0)"><br></span></div><div><span style="background-color:white;color:rgb(0,0,0)">Any help?</span></div><div><span style="background-color:white;color:rgb(0,0,0)"><br></span></div>
<div><span style="background-color:white;color:rgb(0,0,0)">Thanks,</span></div><div><span style="background-color:white;color:rgb(0,0,0)">Frank</span></div>