On Wed, Apr 17, 2013 at 9:24 PM, Björn Grüning wrote:
Hi Peter,
On Wed, Apr 17, 2013 at 6:05 PM, James Taylor <james@jamestaylor.org> wrote:
No it does not have root, and it is very important that we not install anything at the system level since we need to maintain version isolation. We should always be able to inject things into the environment so that Python/Perl/R look in the right place.
So is there any guidance on how that is best done?
I do not now it it is best practise but have a look at
package_numpy_1_7 and package_matplotlib_1_2
I will try to setup a few common python deps, so we can include them easily in tool_dependecies.xml
Thanks - those will be useful. Meanwhile it looks like this thread is now merging with this more general one about dependencies: http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014198.html Regards, Peter