Greg, I don't think there is currently any support for variable substitution of this sort in job runner configuration, but it could definitely be added. Worth filing as an issue. 


--
James Taylor, Assistant Professor, Biology/CS, Emory University


On Wed, Mar 13, 2013 at 8:12 AM, greg <margeemail@gmail.com> wrote:
Hi guys,

I just wanted to check in and see if anyone had any ideas on this.
(It's actually the -A flag I'm after.)

I did try putting this in universe.wsgi:

default_cluster_job_runner = drmaa://-V -pe batch 8 -A Account_Name/

I was thinking galaxy might substitute the user name for
"Account_Name" but no luck :-(

-Greg

On Tue, Mar 12, 2013 at 1:42 PM, greg <margeemail@gmail.com> wrote:
> In our local galaxy install we want the cluster jobs to be run from
> the galaxy user but we want to include a -a [account name] to our grid
> software bills properly.
>
> Here's what I currently have in universe.wsgi:
>
> default_cluster_job_runner = drmaa://-V -pe batch 8/
>
> What I want is something like this:
>
> default_cluster_job_runner = drmaa://-V -pe batch 8 -a [logged in user name]/
>
> Is this possible?
>
> Thanks,
>
> Greg
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