Spunde, Alex wrote:
Hi
Trying to install Galaxy on local machine, using hg:
hg clone http://bitbucket.org/galaxy/galaxy-dist
Get error messages for two eggs:
Scrambling the following eggs failed:
docutils
GeneTrack
Here is more details for docutils (practically same for GeneTrack):
Hi Alex, The error is pretty odd - essentially, setup.py isn't being extracted from the module source. But first, is there a reason that the pre-built eggs don't work? You should be able to run 'python ./scripts/fetch_eggs.py' and get those, which would remove the need to scramble them. --nate
[aspunde@ilmnhw-biolin10 galaxy-dist]$ python scripts/scramble.py docutils
fetch_one(): Using existing source, remove to download again:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/archive s/docutils-0.7.tar.gz
unpack_source(): Removing old build directory at:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils
unpack_source(): Unpacked to:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils
copy_build_script(): Using build script /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/scripts /generic.py
run_scramble_script(): Beginning build
run_scramble_script(): Executing in /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/p y2.6/docutils:
/escher/bioinfoHW/opensource/lib/bin/python scramble.py
Traceback (most recent call last):
File "scramble.py", line 29, in <module>
execfile( "setup.py", globals(), locals() )
IOError: [Errno 2] No such file or directory: 'setup.py'
Traceback (most recent call last):
File "scripts/scramble.py", line 44, in <module>
egg.scramble()
File "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl e.py", line 57, in scramble
self.run_scramble_script()
File "/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scrambl e.py", line 206, in run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for docutils 0.7
Here is basic info about system:
[aspunde@ilmnhw-biolin10 galaxy-dist]$ python --version
Python 2.6
$ hg --version
Mercurial Distributed SCM (version 1.8.3)
$ uname -a
Linux ilmnhw-biolin10.hwus.illumina.com 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17 11:30:06 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
Thanks
Alex Spunde
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: