Hi Patrick,
I think this is worth consideringand will run by team. Genomes are a
bit on hold right now due to the move of the public server, but once
that resumes, I have a ticket going with public requests in it.
Would you please send me the details for this organism: exact
accession(s), special build names/links, and such. You can send to
me direct.
This is the ticket I'll be adding the info to, please don't add
yourself, this is just so you can follow:
https://trello.com/c/kzVklAIE
(There is much more data in pipe, including genomes, tracked
elsewhere).
Meanwhile, you don't need to wait (or want to!), to use the genome
right now, do this as a custom reference genome with tools.
All you need is a fasta copy of the genome in your history. Pay
attention to the "chromosome" identifiers and any identifiers in
related GTF/BED files you intend to incorporate into your analysis
- these almost without exception have to be exactly the same to
function in downstream tool. Here's the how-to:
http://wiki.galaxyproject.org/Support#Custom_reference_genome
http://vimeo.com/galaxyproject/customgenome
Note that the FTP server is now: "usegalaxy.org" instead of any
server mentioned in the films, as noted on the "Upload Data" tool
form.
Thanks,
Jen
Galaxy team
Hello,
I'm working in the university of Lausanne. We are currently
working with fire ants, Solenopsis invicta.
I was wondering if that would possible to upload Solenopsis
invicta's genome on the Galaxy platform, which could be very
useful to us and
certainly to other people.
Thank you !
Patrick Joye
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