4 Feb
2013
4 Feb
'13
7:32 p.m.
On Monday, February 4, 2013, Luobin Yang wrote:
Hi, Peter,
Thanks for pointing them out!
The phi-blast and psi-blast actually share the same binary, both use the psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is used, then it does phi-blast searching.
Best, Luobin
Could you give a few command line examples of how you typically use psiblast, focussing in the main options only? I would find that helpful when putting together a new wrapper - since including all the options right away is overwhelming. Thanks, Peter