On Apr 21, 2011, at 7:49 AM, Leandro Hermida wrote:
> Hi again,
>
> Sorry to maybe not understand how to get started, but I'm trying for something even without the added complexity of a workflow.
>
> If you could point me into the right direction: how would I have a single tool where on the tool form there is a multi-select of certain datasets in the user's history. The user multi selects X datasets in the form and hits submit and Galaxy will launch X tool jobs (on for each of the datasets) at the same time in the history.
>
> How do I go about doing this?
>
> Sorry for being daft,
> Leandro
>
>
> On Tue, Apr 19, 2011 at 4:34 PM, Dave Walton <
Dave.Walton@jax.org> wrote:
> Is the server below down? I'm trying to get there this morning and having
> no luck...
>
>
https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files
> _in_a_directory
>
> Dave
>
>
> On 4/15/11 12:16 PM, "Pieter Neerincx" <
pieter.neerincx@gmail.com> wrote:
>
> > Hi,
> >
> > You're not alone with this request! Unfortunately I wasn't able to join the
> > 2-day Galaxy Hackathon, but I heard from a colleague who just came back that
> > this was one of the topics they worked on. At the end of the hackathon they
> > had a working prototype:
> >
> >
https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files_i
> > n_a_directory
> >
> > Since they had only 2 days, it will need some polish, but I heard this hack
> > already made it into the development branch of Galaxy, so we may see something
> > like this in the near future :)
> >
> > Cheers,
> >
> > Pi
> >
> > On Apr 15, 2011, at 4:28 PM, Dave Walton wrote:
> >
> >> I've essentially asked the same question of the list in the past and gotten
> >> no real response.
> >>
> >> I have the same interest, but from a workflow perspective.
> >>
> >> * A module that allows me to select multiple datafiles (say fastq files)
> >> * Then pass each data file to a separate instance of a workflow that runs
> >> tophat and cufflinks
> >> * then another module that takes the final outputs of each of the workflow
> >> runs and sends them to a final module that merges results.
> >>
> >> I am attempting to implement something like this using the API, though the
> >> API is still pretty green from my perspective.
> >>
> >> I think functionality like this built into the workflow editor would be a
> >> great addition.
> >>
> >> Dave
> >>
> >> On Apr 15, 2011, at 8:14 AM, Leandro Hermida wrote:
> >>
> >>> Hi everyone,
> >>>
> >>> I was wondering what would be the way in Galaxy to program the following:
> >>>
> >>> - User clicks on a tool and form is displayed
> >>> - They use a select multi menu in the form to pick lets say X multiple
> >>> datasets from their history
> >>> - When they click submit the tool launches X number of jobs in the history,
> >>> on for each of the datasets selected.
> >>>
> >>> I have a common use case where users have to manually run the same tool over
> >>> and over again with the same parameters for each dataset of interest in
> >>> their history. I would be great to be able programmatically or otherwise
> >>> with Galaxy to be able to use one form and multi select the datasets and
> >>> then launch the parallel jobs in one go.
> >>>
> >>> regards,
> >>> Leandro
> >>>
> >>> <ATT00001..txt>
> >>
> >>
> >> ___________________________________________________________
> >> Please keep all replies on the list by using "reply all"
> >> in your mail client. To manage your subscriptions to this
> >> and other Galaxy lists, please use the interface at:
> >>
> >>
http://lists.bx.psu.edu/
> >
> > -------------------------------------------------------------
> > mobile:
+31 6 143 66 783
> > e-mail:
pieter.neerincx@gmail.com
> > skype: pieter.online
> > -------------------------------------------------------------
> >
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
>
http://lists.bx.psu.edu/