Good afternoon,<div><br></div><div>I&#39;m having several problems with my local galaxy install which may or may not be related to one another.<div><br></div><div>The first problem I&#39;m having is with the &quot;Display data in browser&quot; feature.  Some files type formats (fastqsanger, fasta) display fine.  However, other file type formats (png, svg, txt) simply do not display at all. I have debugging turned on, but do not see any error within the browser or within the galaxy log or web server log after clicking the &quot;Display data in browser&quot; eyeball icon.  It is simply a blank middle panel.  </div>




<div><br></div><div>The next problem I&#39;m having has to do with downloading files.  Firefox and Safari will download any file from a history, but will just create an empty file on the client.  Again, neither log file show an error with a clue to the problem. Chrome will download some files, but other files give me an error and won&#39;t download: </div>

<div><br></div><div><i>This webpage is not available</i></div><div><i><br></i></div><div><i>error 100 (net::ERR_CONNECTION_CLOSED): The server unexpectedly closed the connection.</i></div><div><br></div><div>In this case, I don&#39;t see anything in the log files either.</div>

<div><br></div><div><br></div><div>Finally, I&#39;m also having a problem logging in from the main welcome page.  It seems to authenticate fine (I get an error when I put in the wrong password and don&#39;t when I put in the correct password), but it doesn&#39;t actually log me in and just takes me back to the main welcome page. </div>


<div><br></div><div>For this problem, I do get an error in the galaxy log: </div><div><br></div><div><div> <i>Exception happened during processing of request from---------------------------------------- </i></div><div><i>(&#39;myip&#39;, 50593)Exception happened during processing of request from </i></div>


<div><i>(&#39;myip&#39;, 50594)</i></div><div><i>Traceback (most recent call last):</i></div><div><i>Traceback (most recent call last):</i></div><div><i>  File &quot;/raid/galaxy_user/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py&quot;, line 1053, in process_request_in_thread</i></div>


<div><i>  File &quot;/raid/galaxy_user/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py&quot;, line 1053, in process_request_in_thread</i></div><div><i>    self.finish_request(request, client_address)</i></div><div>


<i>    self.finish_request(request, client_address)</i></div><div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 322, in finish_request</i></div><div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 322, in finish_request</i></div>


<div><i>    self.RequestHandlerClass(request, client_address, self)</i></div><div><i>    self.RequestHandlerClass(request, client_address, self)</i></div><div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 618, in __init__</i></div>


<div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 618, in __init__</i></div><div><i>    self.finish()</i></div><div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 661, in finish</i></div>


<div><i>    self.finish()</i></div><div><i>    self.wfile.flush()</i></div><div><i>  File &quot;/raid/galaxy_user/lib/python2.6/socket.py&quot;, line 297, in flush</i></div><div><i>    self._sock.sendall(buffer(data, write_offset, buffer_size))</i></div>


<div><i>  File &quot;/raid/galaxy_user/lib/python2.6/SocketServer.py&quot;, line 661, in finish</i></div><div><i>error: [Errno 32] Broken pipe</i></div><div><i>----------------------------------------</i></div><div><i>    self.wfile.flush()</i></div>


<div><i>  File &quot;/raid/galaxy_user/lib/python2.6/socket.py&quot;, line 297, in flush</i></div><div><i>    self._sock.sendall(buffer(data, write_offset, buffer_size))</i></div><div><i>error: [Errno 32] Broken pipe</i></div>


</div><div><br></div><div><br></div><div>I am able to log in via other routes, such as going to &quot;Options-&gt;Saved Histories&quot; which brings up an error &quot;You must be logged in&quot; to work with multiple histories and links to /galaxy/user/login?webapp=galaxy and from there I can log in fine. This happens with both admin and normal users.  It is not a huge problem since I have a work around, but it would be nice to figure out the problem so I don&#39;t have to make my users do the same.<br>





<br clear="all">I should mention that I&#39;m running galaxy-dist changeset <span style="border-collapse:collapse;color:rgb(68, 68, 68);font-family:monospace;font-size:11px;line-height:11px">50e249442c5a </span>on CentOS. The problems seem to be web server independent too as they appear with both Apache and Nginx. I&#39;ve used the following instructions, but I&#39;m just not seeing where the problem(s) is/are:</div>

<div><br></div><meta charset="utf-8"><div><a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer">https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer</a></div><div><a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ApacheProxy">https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ApacheProxy</a></div>

<div><a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Config/nginxProxy">https://bitbucket.org/galaxy/galaxy-central/wiki/Config/nginxProxy</a></div><div><a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Config/WebApplicationScaling">https://bitbucket.org/galaxy/galaxy-central/wiki/Config/WebApplicationScaling</a></div>




<div><br></div><div><br></div><div>Thanks,</div><div>Matt</div><div><br></div><div>-- <br>Matthew Conte<div>Bioinformatics Scientist</div><div>Department of Biology</div><div>University of Maryland</div><div><a href="mailto:mconte@umd.edu" target="_blank">mconte@umd.edu</a></div>



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