Hans-Rudolf,

First off, thanks for the response.

On Friday 07 June 2013 03:00:40 Hans-Rudolf Hotz wrote:

> b) make sure two edit ~/tool-data/shared/ucsc/ucsc_build_sites.txt

> by listing all genomes you are interested to use for the display, eg:

>

> main http://genome.ucsc.edu/cgi-bin/hgTracks? mm7,mm8,mm9

>

> The database attribute of your dataset (ie history item) has to be

> set to either mm7 or mm8 or mm9. You will not get the the display

> option if the database is set to mm10 or hg18

That's it! The test dataset I've been given is part of the "hg19" database, but that isn't included in:

[galaxy@login002 galaxy-dist]$ grep main tool-data/shared/ucsc/ucsc_build_sites.txt

main http://genome.ucsc.edu/cgi-bin/hgTracks? priPac1,danRer4,mm9,mm8,droAna1,mm5,caeRem2,mm7,mm6,panTro1,dm3,panTro2,anoCar1,ce4,galGal3,galGal2,ce1,rn3,rn2,droMoj1,droMoj2,rn4,droYak1,droYak2,dp3,dp2,dm1,canFam1,danRer5,canFam2,danRer3,danRer2,ornAna1,ci2,ci1,tetNig1,bosTau1,bosTau3,bosTau2,equCab1,oryLat1,droAna2,droEre1,ponAbe2,rheMac2,sacCer1,droPer1,droSim1,monDom1,cb1,dm2,droSec1,strPur1,droVir2,droVir1,strPur2,sc1,xenTro1,droGri1,xenTro2,cb3,gasAcu1,caePb1,anoGam1,fr2,fr1,hg15,hg16,hg17,hg18,felCat3,apiMel2,monDom4,apiMel1,ce2

When I uploaded the same dataset to the "Main" galaxy server: https://main.g2.bx.psu.edu/, it did give me the "display at UCSC" option, so they must have updated their database list.

Thanks again,

Malcolm

--

Malcolm Tobias

314.362.1594