That's a shame - I don't see anything in the log either at first reading - it was hoping to see problems with missing datatypes or sniffers, which might explain this. Sorry, I am out of ideas. Peter On Fri, Sep 22, 2017 at 2:41 PM, Pavel Fibich <pavel.fibich@prf.jcu.cz> wrote:
Hi Hans-Rudolf and Peter,
thank you for replies. I tried both suggestions, but no luck.
I made empty database, let galaxy run from it. Than, uploading fasta file again finished in the format 'data', not recognized again.
Also, I did not find anything interesting in the startup logs ( logs are here: https://repeatexplorer-elixir.cerit-sc.cz/galstart2.log ), there are just fine information about datatypes, eg. for fasta:
galaxy.datatypes.registry DEBUG 2017-09-22 15:11:52,810 Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry. ... galaxy.datatypes.registry DEBUG 2017-09-22 15:11:52,929 Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta'
I have only config/datatypes_conf.xml.sample, so I expect that it is default.
If you have any other ideas, I will be glad for them.
Best, Pavel