Are these problems cropping up because of possible system resource limits being imposed on the user that is running galaxy?

It may be worthwhile to check the /etc/login.conf (not sure that the analogous file is in Ubuntu).  Same may be true for Postgres (http://www.postgresql.org/docs/8.2/static/kernel-resources.html).

--hk

From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of J. Greenbaum
Sent: Tuesday, May 22, 2012 9:50 AM
To: julie dubois
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Uploading problem

Hi Julie, All,

I have a similar problem on a test environment with a postgres backend.  The file that I'm uploading is a 50MB GTF file and it I'm getting the same behavior.  Any help would be appreciated.

Thanks,

Jason

--

Jason Greenbaum, Ph.D.
Manager, Bioinformatics Core | jgbaum@liai.org
La Jolla Institute for Allergy and Immunology

---

From: "julie dubois" <dubjulie@gmail.com>
To: galaxy-dev@lists.bx.psu.edu
Sent: Tuesday, May 22, 2012 12:12:06 AM
Subject: [galaxy-dev] Uploading problem

Hi,
I test a production environnement of Galaxy with apache proxy and mysql database.
It work, but when I upload a file (it's not very big : 460 Mo), Galaxy says that dataset is uploading and it has runned since yesterday and it's not finish!
Where can the problem be ? Is it an installation problem or a material limitation : it's run in a machine with 8 Go RAM and 4 cores processor.

Thank you

Julie

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/