Hi Carl Eberhard,

Thank you very much for you help.I have another some questions :

First,

we need to install the needed data,for example sam_fa_indices.loc file of SAM Tools :

index   AaegL1  /afs/bx.psu.edu/depot/data/genome/AaegL1/sam_index/AaegL1.fa
index   AgamP3  /afs/bx.psu.edu/depot/data/genome/AgamP3/sam_index/AgamP3.fa
index   ailMel1 /afs/bx.psu.edu/depot/data/genome/ailMel1/sam_index/ailMel1.fa
index   anoCar2 /afs/bx.psu.edu/depot/data/genome/anoCar2/sam_index/anoCar2.fa
index   apiMel2 /afs/bx.psu.edu/depot/data/genome/apiMel2/sam_index/apiMel2.fa
index   apiMel3 /afs/bx.psu.edu/depot/data/genome/apiMel3/sam_index/apiMel3.fa
index   aplCal1 /afs/bx.psu.edu/depot/data/genome/aplCal1/sam_index/aplCal1.fa

....

so we need to download AaegL1.fa,AgamP3.fa,ailMel1.fa,anoCar2.fa,apiMel2.fa,apiMel3.fa,and so on ,then install all of this needed datas to /afs/bx.psu.edu/depot/data/genome/aplCal1/sam_index/,is it right?

Second,

from the needed datas mentioned in the .loc files in http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup ,we need to download too much data,can we get all these data from some website instead of searching them on Iternet one by one?

 

 

Thanks,

shenwiyn

  

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From: Carl Eberhard

Date: 2013-02-22 01:20

To: shenwiyn

Subject: Re: [galaxy-dev] all the data files in .loc files needed to download ?

Hello,

Yes a local galaxy requires a few steps in order to install the needed data.

The following wiki page should help get you started:

http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup

Let me know if you need more information,

Carl

On Tue, Feb 19, 2013 at 3:59 AM, shenwiyn <shenwiyn@gmail.com> wrote:

Hi all,

Are all the data files in .loc files needed to download and put to the right directory when we install our local galaxy?

 

thaks

shenwiyn

 

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shenwiyn

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