Is this a fresh clone from galaxy-dist or have you pulled it from somewhere else?  It looks like your galaxy clone's lib/galaxy/datatypes/ has been altered to have an extra import, 'gmap', for gmap tools.


On Wed, Mar 6, 2013 at 12:08 PM, David Hoover <> wrote:

I'm trying to load an instance of Galaxy from scratch, and I'm getting this error message after configuration and typing "./":

Traceback (most recent call last):
  File "./scripts/", line 33, in <module>
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 1056, in run
    invoke(command, command_name, options, args[1:])
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 1062, in invoke
    exit_code =
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 227, in run
    result = self.command()
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 650, in command
    app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 350, in loadapp
    return loadobj(APP, uri, name=name, **kw)
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 374, in loadobj
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 399, in loadcontext
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 423, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 561, in get_context
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 620, in _context_from_explicit
    value = import_string(found_expr)
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/", line 125, in import_string
    return pkg_resources.EntryPoint.parse("x=" + s).load(False)
  File "/spin1/users/galaxy/galaxy1/lib/", line 1954, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/web/", line 3, in <module>
    from galaxy.webapps.galaxy.buildapp import app_factory
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/webapps/galaxy/", line 18, in <module>
    from galaxy import config, jobs, util, tools
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/jobs/", line 15, in <module>
    from galaxy import util, model
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/model/", line 13, in <module>
    import galaxy.datatypes.registry
  File "/spin1/users/galaxy/galaxy1/lib/galaxy/datatypes/", line 9, in <module>
    import gmap # added for gmap tools
ImportError: No module named gmap

What is missing?

David Hoover
Helix Systems Staff
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