On Wed, Mar 6, 2013 at 12:08 PM, David Hoover
<hooverdm@helix.nih.gov> wrote:
Hi,
I'm trying to load an instance of Galaxy from scratch, and I'm getting this error message after configuration and typing "./run.sh":
Traceback (most recent call last):
File "./scripts/paster.py", line 33, in <module>
serve.run()
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/serve.py", line 1056, in run
invoke(command, command_name, options, args[1:])
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/serve.py", line 1062, in invoke
exit_code = runner.run(args)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/serve.py", line 227, in run
result = self.command()
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/serve.py", line 650, in command
app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 374, in loadobj
global_conf=global_conf)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 399, in loadcontext
global_conf=global_conf)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 423, in _loadconfig
return loader.get_context(object_type, name, global_conf)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 561, in get_context
section)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 620, in _context_from_explicit
value = import_string(found_expr)
File "/spin1/users/galaxy/galaxy1/lib/galaxy/util/pastescript/loadwsgi.py", line 125, in import_string
return pkg_resources.EntryPoint.parse("x=" + s).load(False)
File "/spin1/users/galaxy/galaxy1/lib/pkg_resources.py", line 1954, in load
entry = __import__(self.module_name, globals(),globals(), ['__name__'])
File "/spin1/users/galaxy/galaxy1/lib/galaxy/web/buildapp.py", line 3, in <module>
from galaxy.webapps.galaxy.buildapp import app_factory
File "/spin1/users/galaxy/galaxy1/lib/galaxy/webapps/galaxy/buildapp.py", line 18, in <module>
from galaxy import config, jobs, util, tools
File "/spin1/users/galaxy/galaxy1/lib/galaxy/jobs/__init__.py", line 15, in <module>
from galaxy import util, model
File "/spin1/users/galaxy/galaxy1/lib/galaxy/model/__init__.py", line 13, in <module>
import galaxy.datatypes.registry
File "/spin1/users/galaxy/galaxy1/lib/galaxy/datatypes/registry.py", line 9, in <module>
import gmap # added for gmap tools
ImportError: No module named gmap
What is missing?
David Hoover
Helix Systems Staff
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/