On Fri, Oct 19, 2012 at 12:00 AM, Fields, Christopher J <cjfields@illinois.edu> wrote:
My local one is set up like this and it works (for augustus):
toolshed.g2.bx.psu.edu/repos/bjoern-gruening/augustus/augustus/0.1 = pbs:///default/-l ncpus=1,mem=8gb,walltime=24:00:00/
The above is the path in within the shed repo.
chris
Hi Chris, This was quite helpful, although I don't know what you mean by "path in within the shed repo". The tool I was trying to specify a runner for is "ncbi_blastn_wrapper" form the "ncbi_blast_plus" repository. This is the past to the tool under the local "shed_tools" directory: shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/9d5beacae92b/ncbi_blast_plus/tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml I did however, now that I see what is the overall look of IDs in these cases, find a way to come up with the correct ID. I put a job to run and looked in "Admin/Manage jobs", the column "Tool" displays the correct ID of the tool running. In my case it ended being: toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.0.13 Thanks a lot for giving me a good hint of what to look for!, Carlos