It&#39;s actually in related to a new galaxy shed tool we developed called meme-chip, we uploaded it to the main Tool Shed site.<div><br></div><div>We provided <span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">tool_data_table_conf.xml.sample and </span><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">xxx.loc.sample</span><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">  along with the tool. After the installation, the loc file has been populated automatically, but the entry inside </span><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">tool_data_table_conf.xml.sample didn&#39;t get populated.</span></div>
<div><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px"><br></span></div><div><font color="#2c3143" face="Verdana, sans-serif"><span style="line-height:20.799999237060547px">Although it can be fixed easily by adding entries to the runtime </span></font><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">tool_data_table_conf.xml manually, it&#39;s good to know if it&#39;s the right way or we are missing something in the shed tool repos.</span></div>
<div><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px"><br></span></div><div><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">Cheers,</span></div>
<div><span style="color:rgb(44,49,67);font-family:Verdana,sans-serif;font-size:12.800000190734863px;line-height:20.799999237060547px">D</span></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Nov 8, 2012 at 10:20 AM, Derrick Lin <span dir="ltr">&lt;<a href="mailto:klin938@gmail.com" target="_blank">klin938@gmail.com</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi guys,<div><br></div><div>After installing the BWA from the Tools Shed, I find there is a new tool_data_table_conf.xml got created under tool-data directory. The file contains the entries of BWA&#39;s loc files.</div>
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<br></div><div>I believe the installed BWA still relies on the tool_data_table_conf.xml under galaxy root dir. Anyone can clarify what the one under tool-data dir is for?</div><div><br></div><div>Regards,</div><div>Derrick</div>

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