[galaxy-dev] [hg] galaxy 2376: Can now optionally create a new group with the...

29 Apr 2009

details:   http://www.bx.psu.edu/hg/galaxy/rev/87885ab394a0
changeset: 2376:87885ab394a0
user:      Greg Von Kuster <greg@bx.psu.edu>
date:      Tue Apr 28 09:44:35 2009 -0400
description:
Can now optionally create a new group with the same name as a role when creating the role, along with more cleanup on the various users / groups / roles templates.

9 file(s) affected in this change:

lib/galaxy/web/controllers/admin.py
templates/admin/dataset_security/deleted_groups.mako
templates/admin/dataset_security/deleted_roles.mako
templates/admin/dataset_security/group.mako
templates/admin/dataset_security/group_create.mako
templates/admin/dataset_security/role.mako
templates/admin/dataset_security/role_create.mako
templates/admin/dataset_security/user.mako
templates/admin/user/create.mako

diffs (485 lines):

diff -r 7fd4f748b0ca -r 87885ab394a0 lib/galaxy/web/controllers/admin.py

--- a/lib/galaxy/web/controllers/admin.py	Mon Apr 27 16:30:08 2009 -0400
+++ b/lib/galaxy/web/controllers/admin.py	Tue Apr 28 09:44:35 2009 -0400
@@ -60,6 +60,7 @@
             description = util.restore_text( params.description )
             in_users = util.listify( params.get( 'in_users', [] ) )
             in_groups = util.listify( params.get( 'in_groups', [] ) )
+            create_group_for_role = params.get( 'create_group_for_role', 'no' )
             if not name or not description:
                 msg = "Enter a valid name and a description"
             elif trans.app.model.Role.filter( trans.app.model.Role.table.c.name==name ).first():
@@ -76,7 +77,14 @@
                 for group in [ trans.app.model.Group.get( x ) for x in in_groups ]:
                     gra = trans.app.model.GroupRoleAssociation( group, role )
                     gra.flush()
-                msg = "Role '%s' has been created with %d associated users and %d associated groups" % ( role.name, len( in_users ), len( in_groups ) )
+                if create_group_for_role == 'yes':
+                    # Create the group
+                    group = trans.app.model.Group( name=name )
+                    group.flush()
+                    msg = "Group '%s' has been created, and role '%s' has been created with %d associated users and %d associated groups" % \
+                    ( group.name, role.name, len( in_users ), len( in_groups ) )
+                else:
+                    msg = "Role '%s' has been created with %d associated users and %d associated groups" % ( role.name, len( in_users ), len( in_groups ) )
                 trans.response.send_redirect( web.url_for( controller='admin', action='roles', msg=util.sanitize_text( msg ), messagetype='done' ) )
             trans.response.send_redirect( web.url_for( controller='admin', action='create_role', msg=util.sanitize_text( msg ), messagetype='error' ) )
         out_users = []
@@ -201,23 +209,12 @@
         params = util.Params( kwd )
         msg = util.restore_text( params.get( 'msg', ''  ) )
         messagetype = params.get( 'messagetype', 'done' )
-        # Build a list of tuples which are roles followed by lists of groups and users
-        # [ ( role, [ group, group, group ], [ user, user ] ), ( role, [ group, group ], [ user ] ) ]
-        roles_groups_users = []
         roles = trans.app.model.Role.query() \
             .filter( trans.app.model.Role.table.c.deleted==True ) \
             .order_by( trans.app.model.Role.table.c.name ) \
             .all()
-        for role in roles:
-            groups = []
-            for gra in role.groups:
-                groups.append( trans.app.model.Group.get( gra.group_id ) )
-            users = []
-            for ura in role.users:
-                users.append( trans.app.model.User.get( ura.user_id ) )
-            roles_groups_users.append( ( role, groups, users ) )
         return trans.fill_template( '/admin/dataset_security/deleted_roles.mako', 
-                                    roles_groups_users=roles_groups_users, 
+                                    roles=roles, 
                                     msg=msg,
                                     messagetype=messagetype )
     @web.expose
@@ -398,23 +395,12 @@
         params = util.Params( kwd )
         msg = util.restore_text( params.get( 'msg', ''  ) )
         messagetype = params.get( 'messagetype', 'done' )
-        # Build a list of tuples which are groups followed by lists of members and roles
-        # [ ( group, [ member, member, member ], [ role, role ] ), ( group, [ member, member ], [ role ] ) ]
-        groups_members_roles = []
         groups = trans.app.model.Group.query() \
             .filter( trans.app.model.Group.table.c.deleted==True ) \
             .order_by( trans.app.model.Group.table.c.name ) \
             .all()
-        for group in groups:
-            members = []
-            for uga in group.members:
-                members.append( trans.app.model.User.get( uga.user_id ) )
-            roles = []
-            for gra in group.roles:
-                roles.append( trans.app.model.Role.get( gra.role_id ) )
-            groups_members_roles.append( ( group, members, roles ) )
         return trans.fill_template( '/admin/dataset_security/deleted_groups.mako', 
-                                    groups_members_roles=groups_members_roles, 
+                                    groups=groups, 
                                     msg=msg,
                                     messagetype=messagetype )
     @web.expose
@@ -627,8 +613,8 @@
         msg = util.restore_text( params.get( 'msg', ''  ) )
         messagetype = params.get( 'messagetype', 'done' )
         users = trans.app.model.User.filter( and_( trans.app.model.User.table.c.deleted==True, trans.app.model.User.table.c.purged==False ) ) \
-                                 .order_by( trans.app.model.User.table.c.email ) \
-                                 .all()
+                                    .order_by( trans.app.model.User.table.c.email ) \
+                                    .all()
         return trans.fill_template( '/admin/user/deleted_users.mako', users=users, msg=msg, messagetype=messagetype )
     @web.expose
     @web.require_admin
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/deleted_groups.mako
--- a/templates/admin/dataset_security/deleted_groups.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/deleted_groups.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -2,7 +2,7 @@
 <%namespace file="/message.mako" import="render_msg" />
 
 ## Render a row
-<%def name="render_row( group, members, roles, ctr, anchored, curr_anchor )">
+<%def name="render_row( group, ctr, anchored, curr_anchor )">
     %if ctr % 2 == 1:
         <tr class="odd_row">
     %else:
@@ -17,18 +17,10 @@
             </div>
         </td>
         <td>
-            <ul>
-                %for user in members:
-                    <li>${user.email}</li>
-                %endfor
-            </ul>
+            ${len( group.members )}
         </td>
         <td>
-            <ul>
-                %for role in roles:
-                    <li>${role.name}</li>
-                %endfor
-            </ul>
+            ${len( group.roles )}
             %if not anchored:
                 <a name="${curr_anchor}"></a>
                 <div style="float: right;"><a href="#TOP">top</a></div>
@@ -43,12 +35,12 @@
     ${render_msg( msg, messagetype )}
 %endif
 
-%if len( groups_members_roles ) == 0:
+%if len( groups ) == 0:
     There are no deleted Galaxy groups
 %else:
     <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%">
         <% 
-            render_quick_find = len( groups_members_roles ) > 50
+            render_quick_find = len( groups ) > 50
             ctr = 0
         %>
         %if render_quick_find:
@@ -69,34 +61,29 @@
         %endif
         <tr class="header">
             <td>Name</td>
-            <td>Members</td>
+            <td>Users</td>
             <td>Roles</td>
         </tr>
-        %for ctr, group_tuple in enumerate( groups_members_roles ):
-            <%
-                group = group_tuple[0]
-                members = group_tuple[1]
-                roles = group_tuple[2]
-            %>
+        %for ctr, group in enumerate( groups ):
             %if render_quick_find and not group.name.upper().startswith( curr_anchor ):
                 <% anchored = False %>
             %endif
             %if render_quick_find and group.name.upper().startswith( curr_anchor ):
                 %if not anchored:
-                    ${render_row( group, members, roles, ctr, anchored, curr_anchor )}
+                    ${render_row( group, ctr, anchored, curr_anchor )}
                     <% anchored = True %>
                 %else:
-                    ${render_row( group, members, roles, ctr, anchored, curr_anchor )}
+                    ${render_row( group, ctr, anchored, curr_anchor )}
                 %endif
             %elif render_quick_find:
                 %for anchor in anchors[ anchor_loc: ]:
                     %if group.name.upper().startswith( anchor ):
                         %if not anchored:
                             <% curr_anchor = anchor %>
-                            ${render_row( group, members, roles, ctr, anchored, curr_anchor )}
+                            ${render_row( group, ctr, anchored, curr_anchor )}
                             <%  anchored = True %>
                         %else:
-                            ${render_row( group, members, roles, ctr, anchored, curr_anchor )}
+                            ${render_row( group, ctr, anchored, curr_anchor )}
                         %endif
                         <% 
                             anchor_loc = anchors.index( anchor )
@@ -105,7 +92,7 @@
                     %endif
                 %endfor
             %else:
-                ${render_row( group, members, roles, ctr, True, '' )}
+                ${render_row( group, ctr, True, '' )}
             %endif
         %endfor
     </table>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/deleted_roles.mako
--- a/templates/admin/dataset_security/deleted_roles.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/deleted_roles.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -2,7 +2,7 @@
 <%namespace file="/message.mako" import="render_msg" />
 
 ## Render a row
-<%def name="render_row( role, groups, users, ctr, anchored, curr_anchor )">
+<%def name="render_row( role, ctr, anchored, curr_anchor )">
     %if ctr % 2 == 1:
         <tr class="odd_row">
     %else:
@@ -16,19 +16,13 @@
                 <a class="action-button" href="${h.url_for( action='purge_role', role_id=role.id )}">Purge</a>
             </div>
         </td>
+        <td>${role.description}</td>
+        <td>${role.type}</td>
         <td>
-            <ul>
-                %for group in groups:
-                    <li>${group.name}</li>
-                %endfor
-            </ul>
+            ${len( role.users )}
         </td>
         <td>
-            <ul>
-                %for user in users:
-                    <li>${user.email}</li>
-                %endfor
-            </ul>
+            ${len( role.groups )}
             %if not anchored:
                 <a name="${curr_anchor}"></a>
                 <div style="float: right;"><a href="#TOP">top</a></div>
@@ -43,12 +37,12 @@
     ${render_msg( msg, messagetype )}
 %endif
 
-%if len( roles_groups_users ) == 0:
+%if len( roles ) == 0:
     There are no deleted Galaxy roles
 %else:
     <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%">
         <% 
-            render_quick_find = len( roles_groups_users ) > 50
+            render_quick_find = len( roles ) > 50
             ctr = 0
         %>
         %if render_quick_find:
@@ -69,34 +63,31 @@
         %endif
         <tr class="header">
             <td>Name</td>
-            <td>Associated Groups</td>
-            <td>Associated Users</td>
+            <td>Description</td>
+            <td>Type</td>
+            <td>Users</td>
+            <td>Groups</td>
         </tr>
-        %for ctr, role_tuple in enumerate( roles_groups_users ):
-            <%
-                role = role_tuple[0]
-                groups = role_tuple[1]
-                users = role_tuple[2]
-            %>
+        %for ctr, role in enumerate( roles ):
             %if render_quick_find and not role.name.upper().startswith( curr_anchor ):
                 <% anchored = False %>
             %endif
             %if render_quick_find and role.name.upper().startswith( curr_anchor ):
                 %if not anchored:
-                    ${render_row( role, groups, users, ctr, anchored, curr_anchor )}
+                    ${render_row( role, ctr, anchored, curr_anchor )}
                     <% anchored = True %>
                 %else:
-                    ${render_row( role, groups, users, ctr, anchored, curr_anchor )}
+                    ${render_row( role, ctr, anchored, curr_anchor )}
                 %endif
             %elif render_quick_find:
                 %for anchor in anchors[ anchor_loc: ]:
                     %if role.name.upper().startswith( anchor ):
                         %if not anchored:
                             <% curr_anchor = anchor %>
-                            ${render_row( role, groups, users, ctr, anchored, curr_anchor )}
+                            ${render_row( role, ctr, anchored, curr_anchor )}
                             <%  anchored = True %>
                         %else:
-                            ${render_row( role, groups, users, ctr, anchored, curr_anchor )}
+                            ${render_row( role, ctr, anchored, curr_anchor )}
                         %endif
                         <% 
                             anchor_loc = anchors.index( anchor )
@@ -105,7 +96,7 @@
                     %endif
                 %endfor
             %else:
-                ${render_row( role, groups, users, ctr, True, '' )}
+                ${render_row( role, ctr, True, '' )}
             %endif
         %endfor
     </table>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/group.mako
--- a/templates/admin/dataset_security/group.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/group.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -53,24 +53,24 @@
         <form name="associate_group_role_user" id="associate_group_role_user" action="${h.url_for( action='group', group_id=group.id )}" method="post" >
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Roles associated with '${group.name}'<br/>
+                    <label>Roles associated with '${group.name}'</label>
                     ${render_select( "in_roles", in_roles )}<br/>
                     <input type="submit" id="roles_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Roles not associated with '${group.name}'<br/>
+                    <label>Roles not associated with '${group.name}'</label>
                     ${render_select( "out_roles", out_roles )}<br/>
                     <input type="submit" id="roles_add_button" value="<<"/>
                 </div>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Users associated with '${group.name}'<br/>
+                    <label>Users associated with '${group.name}'</label>
                     ${render_select( "in_users", in_users )}<br/>
                     <input type="submit" id="users_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Users not associated with '${group.name}'<br/>
+                    <label>Users not associated with '${group.name}'</label>
                     ${render_select( "out_users", out_users )}<br/>
                     <input type="submit" id="users_add_button" value="<<"/>
                 </div>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/group_create.mako
--- a/templates/admin/dataset_security/group_create.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/group_create.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -52,28 +52,29 @@
     <div class="toolFormBody">
         <form name="associate_group_role_user" id="associate_group_role_user" action="${h.url_for( action='create_group' )}" method="post" >
             <div class="form-row">
-                Name: <input  name="name" type="textfield" value="" size=40"/>
+                <label>Name:</label>
+                <input  name="name" type="textfield" value="" size=40"/>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Groups associated with new role<br/>
+                    <label>Groups associated with new role</label>
                     ${render_select( "in_roles", in_roles )}<br/>
                     <input type="submit" id="roles_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Groups not associated with new role<br/>
+                    <label>Groups not associated with new role</label>
                     ${render_select( "out_roles", out_roles )}<br/>
                     <input type="submit" id="roles_add_button" value="<<"/>
                 </div>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Users associated with new role<br/>
+                    <label>Users associated with new role</label>
                     ${render_select( "in_users", in_users )}<br/>
                     <input type="submit" id="users_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Users not associated with new role<br/>
+                    <label>Users not associated with new role</label>
                     ${render_select( "out_users", out_users )}<br/>
                     <input type="submit" id="users_add_button" value="<<"/>
                 </div>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/role.mako
--- a/templates/admin/dataset_security/role.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/role.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -53,24 +53,24 @@
         <form name="associate_role_user_group" id="associate_role_user_group" action="${h.url_for( action='role', role_id=role.id )}" method="post" >
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Users associated with '${role.name}'<br/>
+                    <label>Users associated with '${role.name}'</label>
                     ${render_select( "in_users", in_users )}<br/>
                     <input type="submit" id="users_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Users not associated with '${role.name}'<br/>
+                    <label>Users not associated with '${role.name}'</label>
                     ${render_select( "out_users", out_users )}<br/>
                     <input type="submit" id="users_add_button" value="<<"/>
                 </div>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Groups associated with '${role.name}'<br/>
+                    <label>Groups associated with '${role.name}'</label>
                     ${render_select( "in_groups", in_groups )}<br/>
                     <input type="submit" id="groups_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Groups not associated with '${role.name}'<br/>
+                    <label>Groups not associated with '${role.name}'</label>
                     ${render_select( "out_groups", out_groups )}<br/>
                     <input type="submit" id="groups_add_button" value="<<"/>
                 </div>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/role_create.mako
--- a/templates/admin/dataset_security/role_create.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/role_create.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -52,32 +52,39 @@
     <div class="toolFormBody">
         <form name="associate_role_group_user" id="associate_role_group_user" action="${h.url_for( action='create_role' )}" method="post" >
             <div class="form-row">
-                Name: <input  name="name" type="textfield" value="" size=40"/>
-                Description: <input  name="description" type="textfield" value="" size=40"/>
+                <label>Name:</label>
+                <input  name="name" type="textfield" value="" size=40"/>
+            </div>
+            <div class="form-row">
+                <label>Description:</label>
+                <input  name="description" type="textfield" value="" size=40"/>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Groups associated with new role<br/>
+                    <label>Groups associated with new role</label>
                     ${render_select( "in_groups", in_groups )}<br/>
                     <input type="submit" id="groups_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Groups not associated with new role<br/>
+                    <label>Groups not associated with new role</label>
                     ${render_select( "out_groups", out_groups )}<br/>
                     <input type="submit" id="groups_add_button" value="<<"/>
                 </div>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Users associated with new role<br/>
+                    <label>Users associated with new role</label>
                     ${render_select( "in_users", in_users )}<br/>
                     <input type="submit" id="users_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Users not associated with new role<br/>
+                    <label>Users not associated with new role</label>
                     ${render_select( "out_users", out_users )}<br/>
                     <input type="submit" id="users_add_button" value="<<"/>
                 </div>
+            </div>
+            <div class="form-row">
+                <input type="checkbox" name="create_group_for_role" value="yes" />Create a new group of the same name for this role
             </div>
             <div class="form-row">
                 <input type="submit" name="create_role_button" value="Save"/>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/dataset_security/user.mako
--- a/templates/admin/dataset_security/user.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/dataset_security/user.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -53,24 +53,24 @@
         <form name="associate_user_role_group" id="associate_user_role_group" action="${h.url_for( action='user', user_id=user.id )}" method="post" >
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Roles associated with '${user.email}'<br/>
+                    <label>Roles associated with '${user.email}'</label>
                     ${render_select( "in_roles", in_roles )}<br/>
                     <input type="submit" id="roles_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Roles not associated with '${user.email}'<br/>
+                    <label>Roles not associated with '${user.email}'</label>
                     ${render_select( "out_roles", out_roles )}<br/>
                     <input type="submit" id="roles_add_button" value="<<"/>
                 </div>
             </div>
             <div class="form-row">
                 <div style="float: left; margin-right: 10px;">
-                    Groups associated with '${user.email}'<br/>
+                    <label>Groups associated with '${user.email}'</label>
                     ${render_select( "in_groups", in_groups )}<br/>
                     <input type="submit" id="groups_remove_button" value=">>"/>
                 </div>
                 <div>
-                    Groups not associated with '${user.email}'<br/>
+                    <label>Groups not associated with '${user.email}'</label>
                     ${render_select( "out_groups", out_groups )}<br/>
                     <input type="submit" id="groups_add_button" value="<<"/>
                 </div>
diff -r 7fd4f748b0ca -r 87885ab394a0 templates/admin/user/create.mako
--- a/templates/admin/user/create.mako	Mon Apr 27 16:30:08 2009 -0400
+++ b/templates/admin/user/create.mako	Tue Apr 28 09:44:35 2009 -0400
@@ -6,7 +6,7 @@
 %endif
 
 <div class="toolForm">
-    <div class="toolFormTitle">Create account</div>
+    <div class="toolFormTitle">Create user account</div>
     <div class="toolFormBody">
         <form name="form" action="${h.url_for( controller='admin', action='create_new_user' )}" method="post" >
             <div class="form-row">

    