Hi Aaron, we touched this recently here: https://github.com/galaxyproject/tools-devteam/pull/267 I believe that if you specify the repository_dependencies.xml of your suite in the following way: <repositories> <repository changeset_revision="f2ab5b44870d" name="fasta_clipping_histogram" owner="devteam" toolshed=" http://toolshed.g2.bx.psu.edu" /> you will pin the exact revision of the tool (fasta_clipping_histogram here) to that suite. Then you can have suite_fastx_toolkit_0_0_13 and suite_fastx_toolkit_0_0_9 repositories which will install the requested versions of the tools. M. On Wed, Nov 4, 2015 at 10:47 AM Aaron Petkau <aaron.petkau@gmail.com> wrote:
Okay, thanks Dave. That makes sense. Moving forward I'll just make a new suite with a version number in the name.
Another question, does the same apply for tool dependency definitions? I've upgraded a suite of tools + dependency definitions, and now even if I make a new repository suite (to allow installing of my old set of tools, revision 0 in my example) it's installing the newer commit in one tool dependency definition repository.
Thanks,
Aaron
On Mon, Nov 2, 2015 at 7:59 AM, Dave Bouvier <dave@bx.psu.edu> wrote:
Aaron,
Repository suite definitions are designed to only allow the latest revision to be installable. My recommendation in this case would be to define two separate suites tagged in some descriptive way, so the individual use cases would have their appropriate suites.
- Dave Bouvier http://galaxyproject.org http://usegalaxy.org
On 10/29/2015 02:23 PM, Aaron Petkau wrote:
Hello,
I'm running into some issues with maintaining multiple installable revisions for a repository suite and I'm not sure if there's something I've missed.
I have a local toolshed where I'm maintaining my tools, and I have a repository suite definition, defining a number of dependencies. So, I have:
suite_X (mercurial revision 0): Dependency A Dependency B
I updated "suite_X" and changed the dependencies:
suite_X (mercurial revision 1): Dependency A Dependency B Dependency C
I would like to have both mercurial revision 0 and 1 installable in Galaxy, but only revision 1 (the latest) is showing up as installable. I found documentation at https://wiki.galaxyproject.org/RepositoryRevisions but this seems to only cover a repository containing a single tool, not a suite of tools.
Is there something I'm doing wrong or some setting I have to change here? My toolshed is running with Galaxy tag "v15.07".
Thanks,
Aaron
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/