I'm setting up a Galaxy instance on a new server and am having some issues with BAM file uploads. I'm using the BAM files supplied with JBrowse for testing purposes. I have Galaxy installed on my laptop and file uploads are working fine, so it's evidently an issue with the server and/or OS configuration.
and the upload is empty.
The server is running Scientific Linux and uses the Environment Modules system for dependency management. I can successfully upload bed and bigwig files, which suggests that samtools is being loaded and functioning correctly.