Hi guys, I'm trying to run MACS in my local galaxy install (see screenshot: http://snag.gy/5QGUH.jpg) And I'm getting this error: Usage: macs <-t tfile> [-n name] [-g genomesize] [options] Example: macs -t ChIP.bam -c Control.bam -f BAM -g h -n test -w --call-subpeaks macs: error: no such option: --lambdaset Thanks in advance for any help. -Greg Here's how I installed Macs (I guess it doesn't come built in?)
cd /usr/local/galaxy/downloads/ wget https://github.com/downloads/taoliu/MACS/MACS-1.4.2-1.tar.gz tar -xzvf MACS-1.4.2-1.tar.gz cd MACS-1.4.2 source /usr/local/galaxy/job_environment_setup_file python setup.py install deactivate cd /misc/local/galaxy/galaxy_python/bin ln -s macs14 macs
(and made sure /misc/local/galaxy/galaxy_python/bin is on the galaxy user's path)