Dave, It did contain errors as reported by tailing the last part of the INSTALLATION.log Thanks --Rodolfo make[4]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' Updating dependency information for /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/blastdb/blastdbcp.cpp. make[4]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' make[4]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -g -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DNCBI_WITHOUT_MT -I/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/inc -I/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/include /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -Wl,--enable-new-dtags -g -Wl,-E blastdbcp.o -Wl,-rpath,/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/lib -Wl,-rpath-link,/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/lib -L/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -ldbapi_driver -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -o blastdbcp /bin/bash /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/scripts/common/impl/if_diff.sh ln -f blastdbcp /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin ln -f blastdbcp /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin/blastdbcp make[4]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' make -f /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.app.tmpl srcdir=/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/blastdb TMPL=makeprofiledb -w all make[4]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' Updating dependency information for /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/blastdb/makeprofiledb.cpp. make[4]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' make[4]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -g -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DNCBI_WITHOUT_MT -I/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/inc -I/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/include /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -Wl,--enable-new-dtags -g -Wl,-E makeprofiledb.o -Wl,-rpath,/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/lib -Wl,-rpath-link,/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/lib -L/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/lib -lblastinput-static -lncbi_xloader_blastdb-static -lncbi_xloader_blastdb_rmt-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxalnmgr-static -lblastxml-static -lxcgi-static -lxhtml-static -lwritedb-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxobjutil-static -lxobjread-static -lcreaders-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxalnmgr-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lxconnext-static -lxconnect-static -ldbapi_driver-static -lncbi_xreader-static -lid1-static -lid2-static -lseqsplit-static -lxcompress-static -lxobjmgr-static -lgenome_collection-static -lseqset-static -lseqedit-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -ldl -lnsl -lrt -lm -o makeprofiledb /bin/bash /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/scripts/common/impl/if_diff.sh ln -f makeprofiledb /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin ln -f makeprofiledb /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin/makeprofiledb make[4]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/blastdb' make -C agpconvert -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/agpconvert' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/agpconvert' make -C id2_fetch -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/id2_fetch' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/id2_fetch' make -C agp_validate -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/agp_validate' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/agp_validate' make -C objextract -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/objextract' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/objextract' make -C lds_indexer -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/lds_indexer' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/lds_indexer' make -C bdb_env_keeper -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/bdb_env_keeper' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/bdb_env_keeper' make -C nw_aligner -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/nw_aligner' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/nw_aligner' make -C speedtest -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/speedtest' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/speedtest' make -C idmapper -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/idmapper' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/idmapper' make -C formatguess -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/formatguess' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/formatguess' make -C multireader -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/multireader' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/multireader' make -C read_blast_result -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/read_blast_result' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/read_blast_result' make -C splign -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/splign' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/splign' make -C hfilter -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/hfilter' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/hfilter' make -C annotwriter -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/annotwriter' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/annotwriter' make -C compart -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/compart' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/compart' make -C streamtest -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/streamtest' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/streamtest' NCBI_BUT_EXPENDABLE=' (but expendable)' make -C split_cache -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/split_cache' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' make -C wig2table -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/wig2table' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' make -C netcache -w all_r || exit 5 make[3]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/netcache' make[3]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app/netcache' make[2]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/app' make -C sample -w all_r || exit 5 make[2]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/sample' make[2]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/sample' make -C internal -w all_r || exit 5 make[2]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/internal' make[2]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/internal' make[1]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build' if test -f /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin/gbench; then \ make install-gbench; \ else \ make install-toolkit; \ fi make[1]: Entering directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++' /bin/rm -rf /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/include/ncbi-tools++ /usr/local/bin/install -c -d /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/lib /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/include/ncbi-tools++ /usr/local/bin/install -c /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/bin/* /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin /usr/local/bin/install -c -m 644 /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/lib/* /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/lib cd /usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/include && find * -name CVS -prune -o -print |\ cpio -pd /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/include/ncbi-tools++ /usr/local/bin/install -c -m 644 /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/inc/* /usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/include/ncbi-tools++ make[1]: Leaving directory `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++' ############################################# ############################################# cd c++ && ./configure --prefix=/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a && make && make install STDERR configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/db/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/db/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/ctools/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/ctools/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/misc/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/misc/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/gui/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/gui/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/sample/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/sample/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/internal/Makefile.in] Error 1 (ignored) make[1]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/internal/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/corelib/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/corelib/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/image/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/image/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/qparse/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/qparse/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/demo/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/tables/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/tables/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/bitset/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/bitset/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/bitset/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/util/bitset/demo/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/services/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/services/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/daemons/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/daemons/Makefile.in] Error 1 (ignored) awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find connect/connect in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find connect/xconnect in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find connect/xxconnect in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/ext/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/connect/ext/test/Makefile.in] Error 1 (ignored) awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find connect/ext/connext in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find connect/ext/xconnext in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/cgi/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/cgi/test/Makefile.in] Error 1 (ignored) awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find cgi/cgi in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat awk: cmd. line:1: fatal: cannot open file `/data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat' for reading (No such file or directory) WARNING: couldn't find cgi/fcgi in /data/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/GCC460-Debug64/build/Makefile.flat make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/html/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/html/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/html/demo/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/html/demo/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/serial/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/serial/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/serial/soap/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/serial/soap/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/simple/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/simple/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/lang_bind/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/lang_bind/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/util/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/util/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/ctlib/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/ctlib/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/ftds64/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/ftds64/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/dblib/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/dblib/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/mysql/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/mysql/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/samples/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/driver/samples/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/cache/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/cache/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/cache/admintool/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/dbapi/cache/admintool/Makefile.in] Error 1 (ignored) make[4]: *** [all] Error 2 make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/general/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/general/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/general/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/general/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/seq/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/seq/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/seq/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/seq/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/id1/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/id1/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/entrez2/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/entrez2/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/ncbimime/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objects/ncbimime/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objmgr/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objmgr/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objmgr/util/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objmgr/util/unit_test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/lds/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/lds/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/lds2/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/lds2/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/cddalignview/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/cddalignview/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/manip/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/manip/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/validator/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/validator/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/asniotest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/asniotest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/align/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/align/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/edit/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/edit/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/writers/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/writers/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/eutils/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/eutils/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/snputil/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/snputil/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/app/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/app/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/readers/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/lds/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/lds/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/lds2/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/lds2/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/cdd/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/cdd/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/trace/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/trace/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/patcher/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/patcher/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/alnmgr/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/alnmgr/demo/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/cleanup/test/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/objtools/cleanup/test/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/sequence/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/sequence/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/align/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/align/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/structure/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/structure/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/ms/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/ms/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/gnomon/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/gnomon/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/tree/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/tree/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/phy_tree/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/phy_tree/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/seqqa/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/seqqa/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/cobalt/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/cobalt/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/text/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/text/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/volume_merge/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/volume_merge/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/dbindex_search/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/dbindex_search/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/gumbel_params/Makefile.in] Error 1 (ignored) make[3]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/gumbel_params/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/blastinput/demo/Makefile.in] Error 1 (ignored) make[4]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/algo/blast/blastinput/demo/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2asn/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2asn/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2fasta/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2fasta/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2flat/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asn2flat/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asnval/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/asnval/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/id1_fetch/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/id1_fetch/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/convert_seq/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/convert_seq/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/nmer_repeats/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/nmer_repeats/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/objmgr/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/objmgr/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/gi2taxid/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/gi2taxid/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/netschedule/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/netschedule/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/grid/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/grid/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/agpconvert/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/agpconvert/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/id2_fetch/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/id2_fetch/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/agp_validate/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/agp_validate/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/objextract/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/objextract/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/lds_indexer/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/lds_indexer/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/bdb_env_keeper/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/bdb_env_keeper/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/nw_aligner/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/nw_aligner/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/speedtest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/speedtest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/idmapper/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/idmapper/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/formatguess/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/formatguess/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/multireader/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/multireader/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/read_blast_result/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/read_blast_result/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/splign/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/splign/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/hfilter/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/hfilter/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/annotwriter/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/annotwriter/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/compart/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/compart/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/streamtest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/streamtest/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/split_cache/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/split_cache/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/wig2table/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/wig2table/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/netcache/Makefile.in] Error 1 (ignored) make[2]: [/usr/local/galaxy/galaxy-dist/database/tmp/tmp4sARKY/ncbi-blast-2.2.26+-src/c++/src/app/netcache/Makefile.in] Error 1 (ignored) 44024 blocks ############################################# ############################################# echo 'PATH=/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin:$PATH; export PATH' > '/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/env.sh';chmod +x '/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/env.sh' STDOUT ############################################# ############################################# echo 'PATH=/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin:$PATH; export PATH' > '/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/env.sh';chmod +x '/usr/local/galaxy/bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/env.sh' STDERR ############################################# On Tue, Aug 6, 2013 at 8:16 AM, Dave Bouvier <dave@bx.psu.edu> wrote:
Rodolfo,
--Dave B.
On 8/5/13 15:50:46.000, Rodolfo Aramayo wrote:
Dave,
See below....
On Mon, Aug 5, 2013 at 1:55 PM, Dave Bouvier <dave@bx.psu.edu> wrote:
Rodolfo,
Please keep the thread on the mailing list by using the "Reply all" option.
Apologies
You should now be able to go to the manage repository page, select the tool dependency, then select 'Manage tool dependencies' from the repository actions dropdown and reinstall the blast+ tool dependency.
--Dave B.
I did and it worked well it installed Blast 2.2.26+
However there are two problems:
1. On the admin page "Installed tool shed repository 'ncbi_blast_plus'" The name, Version and Type display correct values. However the 'Installation status' shows no text
2. When I run the same blast job I was able to run before (using Blast+ 2.2.28+...that I installed) I get the following:
error An error occurred with this dataset: blastn: 2.2.26+ Package: blast 2.2.26, build Aug 5 2013 14:01:30 Fatal error: Exit code 255 () Error: NCBI C++ Exception:
"/usr/local/galaxy/galaxy-dist/database/tmp/tmpyhSi2d/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp", line 689: Critical:
Obviously it is the installed Blast that is at fault in here
Did the blast+ tool dependency compile without errors? You should be able to see any errors by clicking on the installed tool dependency, then expanding the blast+ folder and clicking on INSTALLATION.log
Thanks
--R
On 8/5/13 14:03:14.000, Rodolfo Aramayo wrote:
Dear Dave,
Answers below...
On Thu, Aug 1, 2013 at 9:44 AM, Dave Bouvier <dave@bx.psu.edu> wrote:
Rodolfo,
In order to simplify tracking down this issue, could you provide the changeset revision of Galaxy that is running on tamu.edu? To retrieve the revision, execute the following command in your galaxy root directory:
hg id
fd4113962c32+ (stable)
To clarify, our understanding is that you installed the ncbi_blast_plus repository from the main tool shed, and it installed correctly. You then uninstalled the repository, and it also uninstalled properly. You then attempted to reinstall the repository, and encountered the error message cited in your email.
Can you confirm the above?
This is correct
We further understand that the repository is stuck in the 'installing' state.
YES and in the "Manage installed tool shed repositories" says now (after having to restart Galaxy for another reason):
"Installed, Missing tool dependencies"
What options are available from the popup menu next to the
ncbi_blast_plus repository on the manage installed repositories page?
If I click on the little arrow, it says:
Get updates Deactivate or uninstall
'Deactivate or uninstall' is available, can you try uninstalling again, and see if that functions correctly?
It worked!
Before I was not able to do it as I was getting an ugly galaxy error page But now it did uninstall and removed and was able to clone correctly. However, the directory:
./bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin/
is empty!
Should I repopulate it with the one I have in my backup??
Thanks
--Rodolfo
--Dave B.
On 8/1/13 07:38:22.000, Rodolfo Aramayo wrote:
People,
I successfully installed NCBI_Blast_Plus from the toolshed The tool, however, failed to work giving the following error:
Fatal error: Exit code 255 () Error: NCBI C++ Exception:
"/usr/local/galaxy/galaxy-dist/database/tmp/tmpwL5OFq/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp", line 689: Critical: ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL pointer.
I then tried uninstalling/reinstalling the tool
However I now get an eternal 'installing' grey message and when I click 'manage the repo' I get:
#########
URL:
http://galaxy.tamu.edu/admin_toolshed/manage_repository?id=ff08d6222f8e14990... File
'/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File
'/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File
'/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 221 in decorator return func( self, trans, *args, **kwargs ) File
'/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 561 in manage_repository repository = suc.get_installed_tool_shed_repository( trans, repository_id ) File
'/usr/local/galaxy/galaxy-dist/lib/tool_shed/util/shed_util_common.py', line 515 in get_installed_tool_shed_repository return trans.sa_session.query( trans.model.ToolShedRepository ).get( trans.security.decode_id( id ) ) File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/security/__init__.py', line 60 in decode_id return int( self.id_cipher.decrypt( obj_id.decode( 'hex' ) ).lstrip( "!" ) ) ValueError: invalid literal for int() with base 10: 'cb73864b36ce6a1b'
#########
How can I totally uninstall and re-install this tool?
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