On Apr 29, 2016, at 12:48 PM, Christian Brenninkmeijer <christian.brenninkmeijer@manchester.ac.uk> wrote:

Have a look at:
https://github.com/galaxyproject/galaxy/blob/master/lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py

This will attempt to find any dependencies previously install from a toolshed to use in Planemo.

Christian

PS. 
If your package is not exactly named you may have to comment out the condition
if package_name.lower().startswith("package_" + name.lower()):

---

From: galaxy-dev [galaxy-dev-bounces@lists.galaxyproject.org] on behalf of Langhorst, Brad [Langhorst@neb.com]
Sent: Friday, April 29, 2016 5:30 PM
To: Anthony Bretaudeau
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Kallisto tool wrapper?

Salmon works in a similar way to kallisto.

I’ve been tweaking the test toolshed wrapper of that lately, but I have not yet figured out how to get planemo to test it properly - as soon as I do i’ll publish it to the toolshed.

Brad

—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs

On Apr 29, 2016, at 11:07 AM, Anthony Bretaudeau <anthony.bretaudeau@inria.fr> wrote:

Hi,

While working on Trinity, I made a package (but no wrapper) for it in IUC: https://github.com/galaxyproject/tools-iuc/pull/613

It is not yet merged because of a licence problem though...


On 29/04/2016 16:37, Lance Parsons wrote:

I've had requests from users to install Kallisto as Galaxy tool. I didn't see any wrappers or evidence of wrappers in my searching, but I thought I'd ask here to see if anyone is working on or interested in working on such a thing.

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