On May 22, 2013, at 11:36 AM, Sarah Maman wrote:
Hi everyone,
Galaxy is set up on our cluster, and so far everything is working just fine. However, we'd like to change the submission queue from the default to a specific one.
To do so, we tryed to set on the universe_wsgi.ini file the default_cluster_job_runner parameter as following:
default_cluster_job_runner = drmaa://-q test.q -l mem=8G -l h_vmem=10G/
When doing so, an error occured telling us the job has been rejected because 2 queues were specified: the workq (default one) and the test.q.
Should be the queue setting this way ? What are we doing wrong ?
Hi Sarah,
Without knowing what's going on in your environment I can't say for sure, but I would guess that something else is (~/.sge_request?) is also attempting to set the queue. Are you able to use `qsub -q test.q` on the command line as the same user that runs Galaxy?
Thanks,
--nate
thanks for your help,
Sarah
Sarah Maman
INRA - LGC - SIGENAE
Chemin de Borde-Rouge - Auzeville - BP 52627
31326 Castanet-Tolosan cedex - FRANCE
Tel: +33(0)5.61.28.57.08
Fax: +33(0)5.61.28.57.53
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