The API interface is translating my parameters into python repr strings instead of actual strings.
A command that should look like this:
createPrimerFile.py /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta NNNNNN NNNNNN > /slipstream/galaxy/production/data/files/020/dataset_20664.dat
is getting run as this:
createPrimerFile.py /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta __lt__galaxy.tools.parameters.basic.RuntimeValue object at 0x792be10__gt__ NNNNNN > /slipstream/galaxy/production/data/files/020/dataset_20728.dat
|
The input table in the tool info page is:
| Input Parameter | Value | Note for rerun |
|---|
| chemistry type: | <galaxy.tools.parameters.basic.RuntimeValue object at 0x7fee4425ca10> | |
| First barcode | NNNNNN | |
| Second (optional) barcode | NNNNNN |
I’m running a slightly out of date version of Galaxy (I think it is change set 11080:87b586afb054) because this is BioTeam’s Slipstream appliance. Is there any chance this is a known bug? I didn’t see anything in Trello, but I’m really not sure I’ve got the hang of Trello yet.
Thanks
-john