Thanks, almost worked… get --id 78 bash: /home/jovyan/py/get: Permission denied I assume the jovyan is a docker user? On 10/02/16 15:36, "Björn Grüning" <bjoern.gruening@gmail.com> wrote:
Am 10.02.2016 um 15:25 schrieb Jasper Koehorst:
I am currently experimenting with jupyter and it finally works as I am able to use the environment on a local machine. However beside python2.7 how do I load a galaxy history file into for example R, Bash, etc? I could not really find any documentation on these languages beside python 2.7. Is there a website for best practices?
You should have a `get` and a `put` commandline tools in your PATH.
So from bash you should be able to do `get --id 1`.
https://github.com/bgruening/docker-jupyter-notebook/blob/master/get
Hope this works, Bjoern
Kind regards,
Jasper
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