Hi Carl,

On Thu, Jan 31, 2013 at 1:37 PM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote:
> Here you go. I notice a couple of stack traces.
> Thanks!
> Dan
>
>

I noticed that another user on the list seemed to have a similar
problem and I saw that that problem was possibly addressed in a new
commit. I updated to 8531:3299529e0fe8 and I still have the same
problem, but perhaps different output.

I tried logging in and the UI does not seem to recognize that I have
logged in. Then I tried to upload a file and it failed, with a
traceback in the console:

127.0.0.1 - - [04/Feb/2013:09:45:13 -0700] "GET /history HTTP/1.1" 200
- "http://localhost:8080/tool_runner/index" "Mozilla/5.0 (Macintosh;

Intel Mac OS X 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko)

Chrome/24.0.1312.57 Safari/537.17"
127.0.0.1 - - [04/Feb/2013:09:45:12 -0700] "GET /history HTTP/1.1" 200

- "http://localhost:8080/tool_runner/upload_async_message"
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17

(KHTML, like Gecko) Chrome/24.0.1312.57 Safari/537.17"
----------------------------------------
Exception happened during processing of request from ('127.0.0.1', 49617)

Traceback (most recent call last):

  File "/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line 1053, in process_request_in_thread
    self.finish_request(request, client_address)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py",
line 323, in finish_request
    self.RequestHandlerClass(request, client_address, self)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py",
line 641, in __init__
    self.finish()
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py",
line 694, in finish
    self.wfile.flush()
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py",
line 303, in flush
    self._sock.sendall(view[write_offset:write_offset+buffer_size])
error: [Errno 32] Broken pipe
----------------------------------------

Then I started a daemon session in order to be able to send you the
full output, but, although the upload still fails, I don't get this
same traceback in the paster.log. I attach it anyway.

Thanks,

Dan



> On Thu, Jan 31, 2013 at 12:15 PM, Carl Eberhard <carlfeberhard@gmail.com> wrote:
>> Ok - interesting!
>> Can you send me the paster.log from a daemon session where you try an
>> upload?
>>
>> Steps for that are:
>> 1. from the directory of your galaxy installation: sh run.sh --daemon (you
>> should see 'Entering daemon mode')
>> 2. Wait a minute, then load localhost:8080 in your browser, login, and try
>> an upload
>> 3. When that fails, you can shut down: (from the galaxy installation again)
>> sh run.sh --stop-daemon
>>
>> The file 'paster.log' should be in that same directory.
>>
>> Let me know if there are any problems,
>> C
>>
>>