Yeah, nothing happens after SGE gets to the running state. The directory structure of the old ami does not appear in /mnt. The log was posted in the following thread: "Cloudman - When will the symlinks be resolved ?" Additionally, I am not sure what you mean by, "This will not be the same issue as the tool volume update.". Thanks ________________________________ From: Dannon Baker [dannon.baker@gmail.com] Sent: Thursday, August 08, 2013 4:40 PM To: Ravpreet Setia Cc: Ulyanov_Anatoly; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Galaxy on cloud config issues Ravpreet -- can you provide details as to what's failing for you? If I remember correctly, you had an odd issue where nothing was actually appearing at /mnt, right? This will not be the same issue as the tool volume update. On Thu, Aug 8, 2013 at 4:36 PM, Ravpreet Setia <Ravpreet.Setia@oicr.on.ca<mailto:Ravpreet.Setia@oicr.on.ca>> wrote: Anatoly, did this method work for you? It is not working for me. ________________________________ From: galaxy-dev-bounces@lists.bx.psu.edu<mailto:galaxy-dev-bounces@lists.bx.psu.edu> [galaxy-dev-bounces@lists.bx.psu.edu<mailto:galaxy-dev-bounces@lists.bx.psu.edu>] on behalf of Dannon Baker [dannon.baker@gmail.com<mailto:dannon.baker@gmail.com>] Sent: Wednesday, August 07, 2013 8:00 PM To: Ulyanov_Anatoly Cc: galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu> Subject: Re: [galaxy-dev] Galaxy on cloud config issues A new tools volume will be released shortly. For now, you can launch the previous cloudman release using the following: https://main.g2.bx.psu.edu/cloudlaunch?ami=ami-da58aab3&bucket_default=gxy-workshop On Wed, Aug 7, 2013 at 7:42 PM, Ulyanov_Anatoly <Ulyanov_Anatoly@allergan.com<mailto:Ulyanov_Anatoly@allergan.com>> wrote: Hello, Does anybody use the last Galaxy image? I am running Galaxy image on EC2: Instance ID i-1b2d3773 Image ID (AMI) ami-118bfc78 It looks as those three tools have configuration problems: EBOSS Blast+ meme For all three I am getting a message that looks like that: /mnt/galaxy/tmp/job_working_directory/000/2/galaxy_2.sh: blastp: not found Error invoking command: blastp Is there a way to fix configuration files for those tools? Thank you. Best Regards, Anatoly This e-mail, including any attachments, is meant only for the intended recipient and may be a confidential communication or a communication privileged by law. If you received this e-mail in error, any review, use, dissemination, distribution, or copying of this e-mail is strictly prohibited. Please notify the sender immediately of the error by return e-mail and please delete this message from your system. Thank you in advance for your cooperation. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/