>
> Hi
>
> I’m trying to put together a tool + dependency package to use umi-tools (https://github.com/CGATOxford/UMI-tools) from Galaxy.
> I’m at a loss on how I should organise this.
>
> The package is available from either github or pip. Which one is preferable to use? How do I  make sure the package dependencies are installed? I’ve found the <action type="download_by_url”> and <action type=“create_virtualenv”> actions, but I’m not really sure that’s the way to go. I havent found any real resources on how to build package dependencies either.
>
> Any help? Now, approaching it by downloading the package from github with <action type="download_by_url”> and installing it with <action type="shell_command">python setup.py install</action>. This, however, tries to install the package to /usr/bin/ which isn’t desirable (obviously).
>
> Thanks a lot!
> M
>

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/