Peter, Not sure what is all in the EMBOSS and EMBASSY suite that are already part of galaxy: http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/ But I spotted some Smith Waterman stuff. http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/alignment_local_g... I am working myself on the suite of complete (pairwise) genome alignments and plotters using the MUMmer algorithms. They are near finished.... Cheers, Alex Van: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] namens Peter [biopython@maubp.freeserve.co.uk] Verzonden: donderdag 11 november 2010 18:19 Aan: Hans-Rudolf Hotz CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] Classic alignment tools (ClustalW, MUSCLE, T-Coffee, etc) On Thu, Nov 11, 2010 at 5:08 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Peter
A while ago, I started to write a simple tool definition file for 'clustalw2' (see attachment). There are still a lot of options missing, but feel free to use it as a starting point.
Hans
Thanks Hans. Are there any others who've looked at this sort of thing? Peter _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev