Hi Bjoern, Nate, That's good to hear. Sorry, I have been otherwise engaged for the last few months, and was unable to test this. Hoping to get back onto Galaxy stuff again in a month or so! cheers, Simon
-----Original Message----- From: Nate Coraor [mailto:nate@bx.psu.edu] Sent: Saturday, 15 February 2014 4:37 a.m. To: Björn Grüning Cc: Guest, Simon; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Difficulty dispatching toolshed tool jobs via job_conf.xml
Hi Björn,
It should be fixed, the problem was with tools with uppercase characters in the guid:
https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/
--nate
On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Nate & Simon,
was that solved? I think it's still not working? Or is that a regression. In particular shed_host/repos/owner/repo/tool_id is not working, and that is what is 90% needed, or?
Thanks, Bjoern
From: Nate Coraor [mailto:nate@bx.psu.edu]
This should work, it looks like there may be a bug with handling tool shed IDs when determining job destinations. You are actually supposed to be able to use any of:
shed_host/repos/owner/repo/tool_id/version shed_host/repos/owner/repo/tool_id tool_id
I'll take a look at this as soon as possible. One thing you might try in the short term is using the percent encoded tool id in the <tool> tag in job_conf.xml:
Hi Nate,
Using the percent encoded form was the first thing I tried (before emailing the list). It didn't make any difference. I think there's another reason it's not picking it up. Thanks for looking into this.
cheers, Simon
Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or
material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify
======================================================================= privileged the
sender immediately.
=======================================================================
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/