Hello, galaxy developers and maintainers:

I'm a user from the Chinese mainland.

I have ubuntu 12.04 OS and python2.7.3 interpreter. After confirming that I've installed openssl-dev and bzip-dev and python version >2.5, I use virtualenv to create galaxy_env and just run "hg clone https:xxxxxxxx/galaxy-dist; cd galaxy-dist; sh run.sh" in the directory of galaxy. It seems that it's not the problem of linux w/r/x permission.

After downloading some egg of python, the shell display as follows:

############################################################################################

/home/don/galaxy-dist/lib/galaxy/__init__.py:79: UserWarning: Module markupsafe was already imported from /usr/lib/python2.7/dist-packages/markupsafe/__init__.pyc, but /home/don/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs4.egg is being added to sys.path

self.check_version_conflict()

..................

Starting server in PID 12288.

Traceback (most recent call last):

File "./scripts/paster.py", line 34, in <module>

command.run()

File "/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py", line 84, in run

invoke(command, command_name, options, args[1:])

File "/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py", line 123, in invoke

exit_code = runner.run(args)

File "/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py", line 218, in run

result = self.command()

File "/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py", line 303, in command

serve()

File "/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py", line 287, in serve

server(app)

File "/home/don/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py", line 151, in server_wrapper

**context.local_conf)

File "/home/don/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/util/fixtypeerror.py", line 57, in fix_call

val = callable(*args, **kw)

File "/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1314, in server_runner

serve(wsgi_app, **kwargs)

File "/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1264, in serve

threadpool_options=threadpool_options)

File "/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1114, in __init__

RequestHandlerClass, ssl_cont! ext)

File "/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 1094, in __init__

RequestHandlerClass, ssl_context)

File "/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", line 358, in __init__

HTTPServer.__init__(self, server_address, RequestHandlerClass)

File "/usr/lib/python2.7/SocketServer.py", line 408, in __init__

self.server_bind()

File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind

SocketServer.TCPServer.server_bind(self)

File "/usr/lib/python2.7/SocketServer.py", line 419, in server_bind

self.socket.bind(self.server_address)

File "/usr/lib/python2.7/socket.py", line 224, in meth

return getattr(self._sock,name)(*args)

socket.error: [Errno 98] Address already! in use

############################################################################################

And I really have no idea what's wrong with galaxy and python.

Thanks for your help and advice.

Wangdan

2012.10.17