2015-06-22 22:35:37,190 DEBUG master:2482 Monitor done adding service Galaxy (setting config_changed) 2015-06-22 22:35:37,190 DEBUG decorators:59 Cluster not yet ready (STARTING), skipping method cm.master->ConsoleMonitor.newFunction [...] 2015-06-22 22:35:41,192 DEBUG master:2478 Monitor adding service 'Galaxy' 2015-06-22 22:35:41,192 INFO __init__:347 Galaxy service prerequisites OK; starting the service 2015-06-22 22:35:41,196 DEBUG galaxy:84 Using Galaxy from '/mnt/galaxy/galaxy-app' 2015-06-22 22:35:41,212 DEBUG decorators:83 Delay trigger not met (delta: 0; delay: 10. skipping method cm.services.apps.galaxy->GalaxyService.status 2015-06-22 22:35:41,217 DEBUG galaxy:248 Galaxy UI does not seem to be accessible. 2015-06-22 22:35:41,217 DEBUG galaxy:138 Starting Galaxy... 2015-06-22 22:35:41,246 DEBUG galaxy_conf:32 Attemping to chown to galaxy for /mnt/galaxy/tmp 2015-06-22 22:35:41,281 DEBUG galaxy_conf:190 Rewriting Galaxy's main config file: /mnt/galaxy/galaxy-app/config/galaxy.ini 2015-06-22 22:35:41,282 DEBUG galaxy_conf:32 Attemping to chown to galaxy for /mnt/galaxy/galaxy-app/config/galaxy.ini 2015-06-22 22:35:41,917 ERROR misc:848 ---> PROBLEM, running command '/bin/su - galaxy -c "export GALAXY_HOME='/mnt/galaxy/galaxy-app'; export TMPDIR='/mnt/galaxy/tmp'; export TEMP='/mnt/galaxy/tmp'; source $GALAXY_HOME/.venv/bin/activate; sh $GALAXY_HOME/run.sh --pid-file=main.pid --log-file=main.log --daemon"' returned code '2', the following stderr: '' and stdout: 'Activating virtualenv at /mnt/galaxy/galaxy-app/.venv Error: Unable to write to log file: [Errno 13] Permission denied: 'main.log' '
Hi Alexander,When you build the image, did you run the image cleanup step? RabbitMQ's database needs to be cleaned up before building the image otherwise the application won't start properly and the AMQP connection will never be established.You can also post the entire CloudMan's log somewhere and I can take a look there for other clues.On Tue, Jun 16, 2015 at 4:07 PM, Alexander Vowinkel <vowinkel.alexander@gmail.com> wrote:___________________________________________________________Maybe connected. this error (happening multiple times):----------------------------------------
Exception happened during processing of request from ('127.0.0.1', 37201)
Traceback (most recent call last):
File "/home/ubuntu/.virtualenvs/CM/local/lib/python2.7/site-packages/paste/httpserver.py", line 1068, in process_request_in_thread
self.finish_request(request, client_address)
File "/usr/lib/python2.7/SocketServer.py", line 334, in finish_request
self.RequestHandlerClass(request, client_address, self)
File "/usr/lib/python2.7/SocketServer.py", line 651, in __init__
self.finish()
File "/usr/lib/python2.7/SocketServer.py", line 710, in finish
self.wfile.close()
File "/usr/lib/python2.7/socket.py", line 279, in close
self.flush()
File "/usr/lib/python2.7/socket.py", line 303, in flush
self._sock.sendall(view[write_offset:write_offset+buffer_size])
error: [Errno 32] Broken pipe
----------------------------------------2015-06-16 13:59 GMT-05:00 Alexander Vowinkel <vowinkel.alexander@gmail.com>:Hi,I have the following problem:First, the job scheduling didn't work.I tried to upload a file, but the job was waiting.Then I checked "squeue", which timed out.The slurm service was running.Then I restarted the cluster.Now I even have problems access the cloudman admin page.Meaning, the page is loading endless.The machine is not busy (CPU and mem @ htop)In the paster.log it tries this every 4 seconds:2015-06-16 18:35:56,547 DEBUG master:2579 Trying to setup AMQP connection; conn = '<cm.util.comm.CMMasterComm object at 0x7f0aa26d72d0>'
2015-06-16 18:35:56,547 DEBUG comm:30 Setting up a new AMQP connection
2015-06-16 18:35:56,548 DEBUG comm:49 AMQP Connection Failure: [Errno 111] Connection refusedAny idea what this might be?Something seems to be really weird.I am using the next version of CloudMan (dev).I created an own instance with the Cloud Man playbook.Best,Alexander
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