Hello Jeremy,
Galaxy does not come with a display tool for UCSC. There is an integrated display tool, under Visualization, commonly called "Trackster". The icon for Trackster is a set of colored, stacked bars that when hovered over is labeled "Visualize in Trackster".
If you do want to display at the public (or a local mirror) UCSC browser, then some additional set-up is required. Here are the links to the details, including a tutorial:
http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy (scroll to Display at UCSC)
http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial
http://wiki.g2.bx.psu.edu/Admin
Hopefully this helps to get you started,
Jen
Galaxy team
On 11/2/11 3:52 PM, Jeremy Villalobos wrote:
___________________________________________________________Hello:
The display tool for UCSC that comes with the local installation package
does not work. uploading a bigbed file (from the test-data that comes
with the package) does not trigger the webapp to show an option to view
the file using UCSC's viewer.
How do I enable this ?
To reproduce the issue, simply download galaxy using mercurial. change
the host address to 0.0.0.0. and load the bigbed file from the
test-data directory.
Once the file uploads, the user should expect to see a display tool
added to the files description (on the right), but nothing is shown.
Thanks
Jeremy
UNCC
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support