If you have not yet updated your Galaxy instance to the revision from the galaxy-dist repository in bitbucket, then that is most likely the cause of the behavior you are seeing. Greg Von Kuster On Dec 5, 2012, at 12:52 AM, Franco Caramia wrote:
Hi Greg,
I have now modified the tool_dependencies.xml thank you for that..
I still have problems re-installing the tool... (need to reinstall to update the tool dependency and test it correctly)
Is the reinstalling failure related to my galaxy version??
Here is the error: Server Error URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) Module paste.wsgilib:539 in intercept_output <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) Module galaxy.web.framework:746 in fill_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) Module mako.template:296 in render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) Module _base_mako:42 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) Module posixpath:67 in join <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith'
Thanks,
Franco
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