That will be a pain since so many tools can use multiple cores, and if I edit tool XML file, what will happen is I update Galaxy? Will those edited XML be replaced by the files in Galaxy-dist?

Thanks,
Frank


On Nov 30, 2012, at 3:01 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:


On Thursday, November 29, 2012, Fenglou Mao wrote:
I can use aln -t n to ask BWA to use multiple cores if I run it in command line, in Galaxy, I did not find this option even i tried "Full Parameter List", anyone know how to do it? (I installed a local Galaxy server with 64 cores, I want to use multiple cores to run my jobs.)

Thanks,
Frank

The number of cores isn't exposed to the end user (although
in some cases it might make sense to do so), but is rather
down to the Galaxy administrators (in some cases by editing
the defaults in the tool XML or wrapper scripts). There was
a discussion about this on the list recently.

Peter