Hi
We are in the process of creating a Galaxy Tool Shed repo and we need to know what the absolute path of the local installation of the repo is, inside a Python wrapper, since it's unique for every instance of Galaxy. We need this path in order to run an R script.
The only possible way we found on Google is by using the
galaxy.tool_shed.tool_dependencies.install_util.get_tool_shed_repository_install_dir(app, tool_shed_repository)
command, but as I understand it this command is only usable during the installation of a repository.
Is there any way to get the absolute path of the installation directory when a wrapper is executed?
Thanks in advance
--
Jeanré Smit
Bioinformatics and Computational Biology Unit
Department of Biochemistry
University of Pretoria
0002
Cell +27 72 073 6011
Office +27 12 420 5802
Fax +27 12 420 5800