Hej Peter, thanks for the quick reply. My galaxy is a release_17.05 I think the xml is also broken. Cheers Jochen On 10.04.2018 15:28, Peter Cock wrote:
Are you trying to install this?
https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e9637...
If so, it does set out its requirements:
<requirements> <requirement type="package" version="2.2.0">bioconductor-ballgown</requirement> <requirement type="package" version="0.5.0">r-dplyr</requirement> <requirement type="package" version="1.3.2">r-optparse</requirement> </requirements>
However, your Galaxy would have to be using BioConda to do this. This wrapper does not include a legacy Galaxy XML file to declare its package dependencies.
What version of Galaxy do you have?
Peter
On Tue, Apr 10, 2018 at 2:16 PM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Hi,
I'm trying to install Ballgown but it throws some error message after running it:
cannot find 'dataset' while searching for 'param_name.dataset.dataset'
the script does not have test-data file and it also does not install the requirements.
Cheers Jochen
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