Glen Beane wrote:
I'm trying to upload a 26GB BAM file into a shared library in our private Galaxy instance. I've tried at least 5 times with both the "Upload directory of files" and "Upload from filesystem path" options.
I keep getting an error like this:
uploaded bam fileTraceback (most recent call last): File "/galaxydata/galaxy-setup/galaxy-dist/tools/data_source/upload.py", line 414, in __main__() File "/galaxydata/galaxy-setup/galaxy-dist/tools/data_source/upload.py", line 406, in __m error
Hi Glen, I've just committed a change (4690:cae28ae0ac46) which will make it possible to see the whole traceback on the library item info page. If you don't mind pulling this, it'll greatly help in debugging what exactly failed. If you'd rather not pull it, the full traceback should be in the stderr column of the 'job' table in the database. --nate
I haven't had any problems like this before, but this is the largest file I've tried to load into Galaxy. Any suggestions on how to debug this?
-- Glen L. Beane Software Engineer The Jackson Laboratory Phone (207) 288-6153
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