On Thu, Aug 11, 2011 at 4:11 PM, Jeremy Goecks jeremy.goecks@emory.edu wrote:
*The tool should work with general fasta files right now, so the changes needed to support protein and other fastas should be UI-based only.
Right, while of course preserving the (now misleading) tool ID of "Extract genomic DNA 1" and filename of extract/extract_genomic_dna.xml for backwards compatibility.
Only the tool ID is required for backwards compatibility; the filename can be changed.
OK.
First, some minor house keeping - if you can clarify the text for how a user should go from a tabular file to an interval or GFF file, that would be good:
https://bitbucket.org/peterjc/galaxy-central/changeset/d41ee8c41532
Could you transplant/merge that please? Its the only commit so far on my new branch:
https://bitbucket.org/peterjc/galaxy-central/src/extract_region
Regards,
Peter