On Thu, Aug 11, 2011 at 4:11 PM, Jeremy Goecks <jeremy.goecks@emory.edu> wrote:
*The tool should work with general fasta files right now, so the changes needed to support protein and other fastas should be UI-based only.
Right, while of course preserving the (now misleading) tool ID of "Extract genomic DNA 1" and filename of extract/extract_genomic_dna.xml for backwards compatibility.
Only the tool ID is required for backwards compatibility; the filename can be changed.
OK. First, some minor house keeping - if you can clarify the text for how a user should go from a tabular file to an interval or GFF file, that would be good: https://bitbucket.org/peterjc/galaxy-central/changeset/d41ee8c41532 Could you transplant/merge that please? Its the only commit so far on my new branch: https://bitbucket.org/peterjc/galaxy-central/src/extract_region Regards, Peter