Davide Cittaro wrote:
use_printdebug = False
Ah, that was going to be my first question. I suggest just use_debug = False.
solves the memory issue (at least doesn't call paste.PrintDebugMiddleware which calls paste.intercept_output....) BTW, still not able to see BAM files... well, actually I can see the reads at the beginning of chromosome 10, which are the reads at the beginning of my BAM file :-(
d
/* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it <mailto:davide.cittaro@ifom-ieo-campus.it> */
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