Re: [galaxy-dev] Status on importing BAM file into Library does not update

it is also set to True:

...

[galaxy@bic galaxy-dist]$ grep Ryan *.log runner0.log:galaxy.jobs WARNING 2012-01-10 22:17:26,381 Ryan Golhar - self.set_metadata_externally = True

Clearly something else is going on here. On my last import of BAM file, even after samtools finished indexing the BAM files, Galaxy never registered those jobs as completed. So this problem is still there as well.

Thanks for checking these. So, what does your server log for runner0 look like?

it is also set to True: [galaxy@bic galaxy-dist]$ grep Ryan *.log runner0.log:galaxy.jobs WARNING 2012-01-10 22:17:26,381 Ryan Golhar -

self.set_metadata_externally = True