Thats perfect thanks so much!:)

On Fri, Aug 5, 2016 at 11:18 AM, Dannon Baker <dannon.baker@gmail.com> wrote:

Got it, misunderstood your interest.  You want this, see the fill_template usage in this method:  https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/tools/evaluation.py#L454

On Fri, Aug 5, 2016 at 11:10 AM Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:

Hi Dannon, 

This is sort of what I'm looking for. I'm looking for the place where cheetah variables get replaced with input parameter values. I think this may be in another file?

On Fri, Aug 5, 2016 at 10:57 AM, Dannon Baker <dannon.baker@gmail.com> wrote:

Check out https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/jobs/command_factory.py

Let me know if this wasn't what you were looking for.

-Dannon

On Fri, Aug 5, 2016 at 10:49 AM Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:

Within the galaxy app itself, does anyone know where the command line is being built?

Thanks!

Katherine

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