Thanks for the tip. I got admin privileges by creating an admin account, now I can see the full path. So that it basically means, we can't download larger files directly through the browser window but only from tracing the path and copying the file to some other place. Isn't it :) On Thu, Apr 3, 2014 at 2:21 PM, Berner, Thomas <thomas.berner@jki.bund.de>wrote:
If you can't get admin right maybe your admin will set the following option in your universe.ini on True:
# This option allows users to see the full path of datasets via the "View # Details" option in the history. Administrators can always see this. #expose_dataset_path = False
Greetings, Thomas
-----Ursprüngliche Nachricht----- Von: galaxy-dev-bounces@lists.bx.psu.edu [mailto: galaxy-dev-bounces@lists.bx.psu.edu] Im Auftrag von Björn Grüning Gesendet: Donnerstag, 3. April 2014 09:13 An: galaxy-dev@lists.bx.psu.edu Betreff: Re: [galaxy-dev] Problem downloading large processed datasets : galaxy local instance
Hi Nilaksha,
unfortunately you only see the path if you are an admin. Can you get admin right? Otherwise, maybe downloading via the API would an alternative.
Cheers, Bjoern
Am 03.04.2014 09:03, schrieb Nilaksha Neththikumara:
Hi, Thanks a lot for the answer. But I'm afraid that detail panel does not give me the path to the dataset. Have you encountered this problem before?
Nilaksha
On Thu, Apr 3, 2014 at 12:26 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Nilaksha
Use the "!" icon (View details) to get the full path to the data set, and the use 'cp' or 'scp' (if not on the same host) on your terminal.
Hope this helps, Hans-Rudolf
On 04/03/2014 07:27 AM, Nilaksha Neththikumara wrote:
Hello all,
I'm currently successfully running a pipeline for metagenomic analysis on my locally installed galaxy instance and everything seemed to good by far. But when I'm trying to download my processed blast xml output (I used blast+ wrappers for this) , by clicking the small disk button nothing happens. I tried several options. 1) clicked the 'disk' icon to initiate the downloading 2) right clicked the 'disk' icon and tried to use saved linked as, but a dialog box doesnot appear for saving 3) tried copying the link and used curl on bash terminal, but progress bar is stuck at 0%.
I think this is happening because my blast output dataset is much larger (around ~10GB) , but if that's the case, how am I supposed to get the data out of galaxy any way??
Thank a lot in advance.
Regards! Nilaksha
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