Resending because I forgot to reply-all: Older versions of Planemo should just respect an 'export TMPDIR="/new/tmp"' before calling planemo. I think recently we introduced a work around for some conda problems (https://github.com/galaxyproject/planemo/pull/460) that causes this not to be respected if the tmp directory is too long - there should be a way to manually configure Planemo's tempdir but there is not at this time. -John On Fri, Apr 29, 2016 at 12:02 PM, D K <danielfortin86@gmail.com> wrote:
Hi Galaxy-Devs,
Is it possible to change the temporary directory used by planemo test? The reason is that one of my xml tools uses ssh to connect to a machine specifically due to licensing requirements e.g.:
<command> ssh address.com 'sh runCommand.sh $input' > $output </command>
Unfortunately, when executing a planemo test, the input is copied into a local temporary directory (/tmp) which is of course different from the /tmp directory on the computer where the bash script is being executed. I've tried changing the TMP and TEMP environment variables to a location that is available to both machines but that hasn't worked.
Is there a workaround?
Thanks!
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