Sorry, I see that the link does not work. Or maybe under, /galaxy-central/tools/data_source/ucsc_tablebrowser.xml ? I'm willing to help writing some documentation of this if not already in bitbucket. Victor Victor On Nov 2, 2010, at 1:21 PM, Victor Ruotti wrote:
Hi David, This might help you. http://bitbucket.org/galaxy/galaxy-central/wiki/UCSC2Galaxy
Victor
On Nov 2, 2010, at 1:10 PM, David Hoover wrote:
I modified universe_wsgi.ini and the files in ~/tool-data/shared/ucsc, then restarted galaxy, but it still downloads data from UCSC instead of the local mirror. Is there something I missed?
David
On Nov 2, 2010, at 1:31 PM, Victor Ruotti wrote:
Hi David, For the table browser we set up here. [galaxy:tool_runners] biomart = local:/// encode_db1 = local:/// hbvar = local:/// microbial_import1 = local:/// ucsc_table_direct1 = http://localgenome.cgi-bin/hgTables ucsc_table_direct_archaea1 = local:/// ucsc_table_direct_test1 = local:/// upload1 = local:///
For displaying the actual genome with bed files we changed the file. /galaxy-central/tool-data/shared/ucsc
So it points to our local genome browser.
Hope this helps. Victor
On Nov 2, 2010, at 12:23 PM, David Hoover wrote:
Is there any way of having Galaxy use a local mirror of the UCSC Genome Browser instead of the main site? Is there a central config file somewhere that I can just change genome.ucsc.edu to something else?
David Hoover Helix Systems Staff http://helix.nih.gov _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
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