No, It's not. Btw do you think this problem is causing due to the capacity of the dataset.? have you experienced this before? Thanking you, Nilaksha On Thu, Apr 3, 2014 at 12:43 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
This might be due to different version of Galaxy. Is the "Job Command-Line" listed? - Depending on the tool, you might find the path there.
Hans-Rudolf
:Do you have the will also find the path in the "job command
On 04/03/2014 09:03 AM, Nilaksha Neththikumara wrote:
Hi, Thanks a lot for the answer. But I'm afraid that detail panel does not give me the path to the dataset. Have you encountered this problem before?
Nilaksha
On Thu, Apr 3, 2014 at 12:26 PM, Hans-Rudolf Hotz <hrh@fmi.ch <mailto:hrh@fmi.ch>> wrote:
Hi Nilaksha
Use the "!" icon (View details) to get the full path to the data set, and the use 'cp' or 'scp' (if not on the same host) on your terminal.
Hope this helps, Hans-Rudolf
On 04/03/2014 07:27 AM, Nilaksha Neththikumara wrote:
Hello all,
I'm currently successfully running a pipeline for metagenomic analysis on my locally installed galaxy instance and everything seemed to good by far. But when I'm trying to download my processed blast xml output (I used blast+ wrappers for this) , by clicking the small disk button nothing happens. I tried several options. 1) clicked the 'disk' icon to initiate the downloading 2) right clicked the 'disk' icon and tried to use saved linked as, but a dialog box doesnot appear for saving 3) tried copying the link and used curl on bash terminal, but progress bar is stuck at 0%.
I think this is happening because my blast output dataset is much larger (around ~10GB) , but if that's the case, how am I supposed to get the data out of galaxy any way??
Thank a lot in advance.
Regards! Nilaksha
_____________________________________________________________
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/__search/mailinglists/ <http://galaxyproject.org/search/mailinglists/>