| atlas | 3.10.1 | package | Error | cat: ..//CONFIG/src/Makefile: No such file or directory cp: ..//CONFIG/src/atlcomp.txt: No such file or directory make: *** No rule to make target `xconfig'. Stop. /bin/sh: line 1: ./xconfig: No such file or directory |
| lapack | 3.4.2 | package | Error | CMake Error: your Fortran compiler: "CMAKE_Fortran_COMPILER-NOTFOUND" was not found. Please set CMAKE_Fortran_COMPILER to a valid compiler path or name. CMake Error at /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 (get_filename_component): get_filename_component called with incorrect number of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed CMake Error at /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 (get_filename_component): get_filename_component called with incorrect number of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed CMake Error at /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 (get_filename_component): get_filename_component called with incorrect number of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed CMake Error at /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 (get_filename_component): get_filename_component called with incorrect number of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed CMake Error at /opt/local/share/cmake-2.8/Modules/CMakeFortranInformation.cmake:27 (get_filename_component): get_filename_component called with incorrect number of arguments Call Stack (most recent call first): CMakeLists.txt:2 (project) CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage CMake Error: Internal CMake error, TryCompile configure of cmake failed |
| phast | 1.3 | package | Error | make[1]: *** No rule to make target `/Users/gvk/workspace/tool_dependencies/clapack/3.2.1/rico/package_clapack_3_2_1/56a949e5f998/lapack.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/lib/../../lib/liblapack.a'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/dless/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/dless/../../bin/dless'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/exoniphy/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/exoniphy/../../bin/exoniphy'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastCons/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastCons/../../bin/phastCons'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastOdds/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastOdds/../../bin/phastOdds'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastMotif/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phastMotif/../../bin/phastMotif'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloFit/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloFit/../../bin/phyloFit'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloBoot/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloBoot/../../bin/phyloBoot'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloP/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/phyloP/../../bin/phyloP'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/prequel/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/prequel/../../bin/pbsDecode'. Stop. make[1]: *** No rule to make target `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/util/../../lib/libphast.a', needed by `/Users/gvk/workspace/galaxy-central/database/tmp/tmp-toolshed-mtdM9orSY/phast-1.3/src/util/../../bin/all_dists'. Stop. make: *** [all] Error 2 |
my galaxy instance:
parent: 10587:1f34ec186fcf
Pack script.
branch: stable
commit: 3 modified, 91 unknown
update: (current)
testtoolshed.g2.bx.psu.edu:
parent: 10592:ea0c57f1cdf0 tip
Fix for unicode values in rst_to_html.
branch: default
commit: 34 unknown (clean)
update: (current)
Try to install this repository:
http://testtoolshed.g2.bx.psu.edu/view/rico/genome_diversity
URL: https://oocyte.bx.psu.edu/admin_toolshed/prepare_for_install?tool_shed_url=http://testtoolshed.g2.bx.psu.edu/&repository_ids=d43c67507430e220&changeset_revisions=b63d27fdf040
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond
app_iter = self.application(environ, detect_start_response)
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
return self.application(environ, start_response)
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__
return self.app( environ, start_response )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
return self.application(environ, start_response)
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/web/framework/base.py', line 190 in handle_request
body = method( trans, **kwargs )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/web/framework/__init__.py', line 221 in decorator
return func( self, trans, *args, **kwargs )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 911 in prepare_for_install
includes_tool_dependencies )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/common_install_util.py', line 85 in get_dependencies_for_repository
installed_rd, missing_rd = get_installed_and_missing_repository_dependencies_for_new_install( trans, repo_info_tuple )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/common_install_util.py', line 214 in get_installed_and_missing_repository_dependencies_for_new_install
tool_shed, name, owner, changeset_revision, prior_installation_required = suc.parse_repository_dependency_tuple( rd_tup )
File '/scratch/galaxy/home/oocyte/galaxy_oocyte/lib/tool_shed/util/shed_util_common.py', line 1197 in parse_repository_dependency_tuple
prior_installation_required = str( prior_installation_required )
UnboundLocalError: local variable 'prior_installation_required' referenced before assignment
contains_error = False
repository_dependency_tuple = ['http://testtoolshed.g2.bx.psu.edu/', 'package_clapack_3_2_1', 'rico', '56a949e5f998', 'True', 'False']
-rico
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