Hi Dannon,

Thanks for this information. Will the ENA SRA button be enabled on the next update of Cloudman?

Is there a protocol (or help page) available for how to re-enable tools in the 'tool_conf.xml'? One of the great things about Galaxy Cloudman is that someone who doesn't know programming (myself and many other biologists and clinicians) can seamlessly use the platform. Unfortunately, when trivial issues arise where the solution is to insert a line or two of code in the universe of Galaxy Cloudman people like me are stymied and really don't even know where to start. I know it requires work at some level, but a tutorial on "how to find your 'tool_conf.xml'" (or "dummies guide to quick Cloudman fixes") would likely be helpful to many end users (including myself).

Thanks again, Dannon!

Cheers,

Mo Heydarian

PhD candidate
The Johns Hopkins School of Medicine
Department of Biological Chemistry
725 Wolfe Street
402 Biophysics

Baltimore, MD 21205

On Wed, Apr 2, 2014 at 5:03 PM, Dannon Baker <dannon.baker@gmail.com> wrote:

Hey Mo,
Sorry for the super delayed response here. I can't find a decision to remove it documented anywhere, so my guess is that this tool was unintentionally removed when we last updated the volume. It's actually still available on disk, though, and can be re-enabled in your tool_conf.xml by adding the following back to your Get Data section:

<tool file="data_source/ebi_sra.xml" />

-Dannon

On Mon, Mar 10, 2014 at 11:53 AM, Mohammad Heydarian <mheydar1@jhmi.edu> wrote:

Hi Cloudman Development Team,
I noticed on the most recent Cloudman release (revision 11219:5c789ab4144a) that there is no option to "Get Data" from the ENA SRA. We've found that retrieving large (fastq) data sets from public databases into Galaxy/Cloudman is the most convenient from the ENA SRA option in the "Get Data" menu. Will this option be coming back, or is the ENA SRA option permanently removed?

Cheers,
Mo Heydarian

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