Hi, I have a perl script which executes a Java JAR file located in tool-data/shared/jars/ and this Jar file at one point executes 2 other binary programs during its job process. These 2 programs are located in the same directory as the JAR file.<div>
<br></div><div>I am getting errors in Galaxy saying &quot;No such file or directory&quot; when these 2 external programs are called. I am assuming this is the case because they are not located in current working directory of the current Galaxy job process. </div>
<div><br></div><div>Is there a way to somehow redirect Galaxy into the correct directory where the binary files are located?</div><div><br></div><div>Thanks.</div>