On Fri, Aug 12, 2011 at 2:25 PM, Jeremy Goecks <jeremy.goecks@emory.edu> wrote:
Actual result: Red error against the gff file, Unspecified genome build, click the pencil icon in the history item to set the genome build
The fact I'm using a FASTA file from my history should mean the genome build is irrelevant as that only applies to "locally cached genomes" (right?).
Correct. Fixed in galaxy-central changeset 07de40a5a0b9
Thanks, J.
Great. Could you try that example on the latest galaxy-central please? I have revision 06f0bca6de24 and get the following error using the steps given earlier: Traceback (most recent call last): File "/home/pjcock/repositories/galaxy-central/tools/extract/extract_genomic_dna.py", line 261, in if __name__ == "__main__": __main__() File "/home/pjcock/repositories/galaxy-central/tools/extract/extract_genomic_dna.py", line 128, in __main__ chrom = feature.chrom AttributeError: 'Header' object has no attribute 'chrom' Thanks, Peter P.S. Perhaps you could apply this fix before tacking the above issue? http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-August/006366.html That would save me having to merge it after the trunk changes.